Coregonus clupeaformis (lake whitefish): 121545472
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Entry
121545472 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 6
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121545472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121545472
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121545472
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
DbpA
Nup35_RRM_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121545472
NCBI-ProteinID:
XP_041711953
LinkDB
All DBs
Position
30:1822048..1829664
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AA seq
337 aa
AA seq
DB search
MPRIYVGKLNYNAREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKEL
CGERVTVEHARGPRRDRDGYGGGGGGGGRSSSGYSSSRSRTGRDKYGPPVRTEYRLIVEN
LSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFGSRSDMRRALDKLDGTDINGRKI
RLVEEKSRRRRSYSGSRSRSRSRRRSRSRSRRSSRSRSNSRSRSRSHSRNKRRHSKSARK
SRSHSRTRKSRSRSNKSKSRSKSCSKVKSERDSRSHSKEKSASKKSRSRSASPMENGKEE
RSSRSPSPAADRPSKSPDKRSVSHSKSRSRSRSASRD
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcatatatgttggaaaacttaattataacgctcgagaaaaagacattcaaaga
tttttcagtggctacggaaagcttatggaaattgatctgaaaaatggatatggctttgta
gagtttgaggacaatcgcgatgcggacgacgcagtgtatgaactgaatggcaaggagttg
tgcggggagcgcgtgaccgtggaacatgcccgaggaccgcggcgtgaccgagatggatat
ggtggtggtggcgggggtggtggtcgcagtagtagtggttacagcagcagcagaagccgc
actggcagggataagtacgggccacccgtccgtacggagtaccgactgattgttgagaat
ctgtccagccgctgcagctggcaggatctgaaggatttcatgcgccaggctggagaggtc
acgtatgccgacgcccataaggagcgtaccaatgagggtgtcatcgagttcggctcgcgt
tcggacatgagaagggccctagacaagctggacggcacagacatcaacgggaggaagatc
cgcctggtggaggaaaagtcccgccgccgacgctcctactccggcagtcggtccaggtct
cgcagcagacgtcgctctcgtagcaggagccgcaggagcagtcgctccaggagtaactcc
agatcccgctcccgatcccattctcgcaacaagagacgccactccaagtctgcaaggaag
tctcgttcccactctcgcacccgcaaatccagatcccgttccaacaaaagcaagtcccgt
tccaagagctgctcaaaggtgaaatccgagcgggattcccgcagccactccaaggagaag
tctgccagcaagaagtcccgtagccgctcagcgtctcccatggaaaatgggaaggaggag
cgttcctctcgctccccttccccagcagctgaccgtccctccaagtctccggacaagcgt
tcggtctcccactccaaatcccgctccaggtcaagatcagcgtcccgagattaa
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