Coregonus clupeaformis (lake whitefish): 121545505
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Entry
121545505 CDS
T08357
Name
(RefSeq) AF4/FMR2 family member 2
KO
K15194
AF4/FMR2 family member 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121545505
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
121545505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AF-4
AFF4_CHD
AF4_int
THD_CWZF3-5-7
Motif
Other DBs
NCBI-GeneID:
121545505
NCBI-ProteinID:
XP_045062540
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All DBs
Position
3:complement(34351300..34552229)
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AA seq
1348 aa
AA seq
DB search
MDLFEFDFFRDWELEQQCHYEQDRSALKKREWERRTQEVQQDEDLFSSGFNLFGEPYKTE
APSLSTLGGTNNLNKTNKGDALANRVQNTLGNYDEMKELLTSHSNQSHLVGIPKNSVPQT
PSPSFFTEGGQRTSNRASTGHNTTSMPPPPSSSSLTSSTRLSSHQSSKKNRSSDWLQGAH
CSSSTSTQGMGGKGVGGQGVGVPASSRGKHSSTHEQQQQQPQRHEELFSSQGDVVGHKGD
SSSSPTSSTISRRHGGGQQQAPKAPSAAEQCGYKDSNTHVMSPLEQEPDSHGCSSPMAST
SLLPSGLSTPTFPQGLHVKPSAVQQQKPTAYVRPMDGQDQVPLDSPELKPPLEVGDVGYS
NPAFGSTTTSSKSKLPKLTLTQTGEVSLSSDSSCVEEILREMTHSWPPPLTAIHTPGKAE
QTKFPIPSKESQHLPSGYAGQKRCNVPGNKPATKSVPQKSMLEDDLKISSDEEDTEQQAA
EKPKPRSTPLSIPVATSRTSDPGHSSGASGSSSESESSSESDSDSESSSSDSECNGASRT
ATPEPEPPSTNKWQLDKWLNKVTPHNKALINTQPERESHGLSSTQPEHSQQAPEAPGKSK
PGPTALLALTDPKERALLSPIREKAKPKTGPKVSEGKSSKVKSPAAVAVEPAPARRSLGK
KQPKKVERSSSLEEHTSWSKPINPTISTTPKEKDPPPLLEPPKSRTKSTSGKTAPRKEPR
TTTTTTITPAPPPPAPVLDKKKHRGPSKIIPKSKEFIETESSSSECHSEPEELVKIHNPP
CPGPSSLQTLKAAKDCNSNILSVSNLTSTCSTSISIPDPGAADLLGDPLFSPVPIVQNEL
LSPLRDFEDIKSLWVKIELSFLSRIPGQDPPEPPPVKVEPREPHEPSTKHRRQSPASLQS
TPVEKPPSKAKRKHKTDHCDAVGGSKKLRLGKDPMLLPPCISPIHNHKNISTKDSLRKQP
RKREEKRELLPPLLSPLSDEPPVRQRRTSECSSVSQEGGASSATSNLLLPTLSCSLPPFS
SSSSSSSSHKHRSKGESKSFSHSKTSSEEDTHSKPSGSFHGNGQSDSDVWSNPSSLSMDH
MEPRRPKLMFNNTVHNADYYMQEAKKLKHKADALMEKFGKAVNYADGALSFIECGNAMER
DPLEAKSPYTMYSETVELIRYAMRLKNFTSHSATVAEKKLAVLCNRCLSLLYLRMFKLKK
DHAVKYSRSLMEYFKKSPQAPSPWGANGKSTGTPSPLSLSPSPVSSVSSSTGPGLAGSGA
SGASGASGNVAIPQRIHHMAASHVNITNNILRSYEHWDTAEKLATESQEFFQDLDSMMEP
LSQHSSMTGLVRYIRQGLHWLRIEAHML
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggacctattcgagtttgacttctttagggactgggaactggagcaacagtgtcattac
gagcaggaccgcagtgcactcaagaagagggagtgggagcggcggactcaggaggtgcag
caggacgaagatctcttctcctccgggtttaatctgttcggggagccgtacaagacagaa
gcacccagtctatccactttgggggggaccaacaacctaaacaagaccaacaaaggtgat
gccctggccaaccgagtacagaacactctggggaactacgatgagatgaaggagctcctg
accagccactccaaccagagccacctggtggggatccccaagaactctgttccccagacc
cccagccccagcttcttcaccgaggggggccagaggacgagcaacagggcgagcacgggg
cacaataccacctccatgccccctccgccctcctcttcatccctgaccagctccacccgg
ctgagcagccatcagagctccaagaagaaccgctcctccgactggttgcagggagcccac
tgctccagcagcactagcacccaagggatggggggtaagggggtgggggggcagggggtg
ggggtcccagccagcagcagggggaaacactcgtccacccacgagcagcagcagcagcaa
ccccagagacacgaggagctgttcagctcacagggcgacgtcgtgggccacaagggagac
tccagcagcagccccacctcctccactatctccaggaggcacggcggcggacaacagcag
gcccctaaggccccttcggcagccgagcaatgcggatacaaggacagcaacactcatgtt
atgtctcccctggagcaggagccggactcccacgggtgcagttcccccatggcctccacc
tccctgcttcccagcggcctttccacgcccaccttcccccagggcctgcatgtaaagccc
agtgccgtgcagcagcagaagcccacagcctacgttcggcccatggacggccaggaccag
gtgcccctggactccccggagctcaagcctcctctggaggtgggggacgtgggctacagc
aacccagcctttggcagcaccaccaccagctccaagagcaagctgcccaagctgaccctg
acacagactggagaggtcagcctgtccagtgactccagctgtgtggaggagattctacgg
gagatgacccactcctggcctcctcccctgactgccatccacactccaggcaaggctgag
cagaccaagttccctattccctccaaggagtcacaacacttaccctcaggatacgctgga
caaaagcggtgcaatgttcccggtaacaagcctgcaaccaagtctgtaccacagaagtca
atgcttgaggatgacctgaagatcagcagtgacgaggaggacactgaacaacaggcagca
gagaagcccaagcccagaagtacacctctcagcatccctgtggccacgtctcggaccagt
gacccgggccactccagcggtgcctcgggcagctccagcgaatcagagagcagctccgag
tcagactcagatagtgagagcagctccagtgacagcgagtgtaacggggcctcccggacc
gccaccccagagcctgaacctccatcaacaaacaaatggcagctggataagtggctgaac
aaagtaaccccacacaacaaagcacttatcaatacccagccagagagagagagccatggg
ctcagcagcacccaacctgaacacagccaacaggcccctgaggccccagggaagagcaag
cctggccccaccgccctgctggccctgaccgaccccaaagaacgggccctcctcagcccc
atccgagagaaggccaagcctaagactggaccaaaggtctcagagggcaagagttcaaag
gtcaaatccccagccgcggtggcggtggagccggccccagccaggcgcagcttggggaag
aaacagccgaagaaagtagagcgctcatccagcctggaggaacacacctcctggtccaag
cccatcaaccccaccatcagcactacacccaaggagaaggaccctccgcccctcctggag
ccacccaagtccaggaccaagagcaccagtgggaagactgcccctaggaaggagcctcgc
accaccactaccactacaattactccagctcctcctccgccagccccagtcctggacaag
aagaagcacagggggcccagcaagatcatccccaagtccaaggagttcatcgagacggaa
tcttcgtcgtctgagtgccactctgaaccagaggagctggtcaagatccataaccctccc
tgtccaggacccagcagtctgcagactctcaaagcagccaaggactgcaacagtaatatc
ctgagtgtcagtaaccttaccagcacctgcagcacttccatatccatcccagaccctggg
gccgcggacctcctaggggaccccctcttctcccccgtccccatcgtccagaacgaactg
ctgtcccctctcagggactttgaggacatcaagtcactgtgggtgaagatcgagctgagc
ttcctgtctaggattccagggcaggacccccctgagccccctcctgtgaaagttgagcca
cgggaaccacatgaacccagcaccaagcacagacgacagtcccccgccagtcttcagtct
acccctgttgagaaaccacctagcaaggccaagaggaaacacaagacagaccattgtgat
gctgtcggcggaagcaagaagttacggttggggaaagaccccatgcttcttcccccatgc
atttcaccaatacacaaccacaagaacattagcacaaaagactctctgaggaaacagccc
aggaagagagaggagaagcgagagctgctgcctcccctgctttctccactctccgacgaa
ccccctgtccgccagcgcaggaccagcgagtgttcctccgtcagccaggagggcggcgct
agcagcgccaccagcaacttattactacccaccctcagctgctctctgccccccttctcc
tcctcctcctcctcctcttcctcacacaaacaccgcagcaaaggagagagcaaatccttc
tcacattccaagacaagcagtgaggaagatacccatagcaagccgtctggcagtttccat
ggcaacggtcagtccgattccgacgtttggtccaacccgtcatctctgtccatggaccac
atggagcccaggaggcccaaactaatgttcaataacacagttcacaatgcagactactac
atgcaagaagccaagaaactaaagcacaaagcagatgcactgatggagaagtttggcaaa
gccgttaactacgctgatggggcgctgtcgttcatcgagtgtggcaacgccatggagcgg
gacccgctggaggccaagtctccatacactatgtactctgagacagttgaactcatcagg
tatgccatgaggttaaagaactttacaagtcactcagcaactgtagccgagaagaaatta
gctgttttgtgcaatcgttgtttatccctcctgtacttgagaatgttcaaattgaagaag
gaccatgcagtaaagtattcccgttccctaatggagtatttcaagaaaagtccccaagca
ccttcgccatggggagccaatggaaagagcacaggcaccccgtcgcccctgtctctgagt
ccctccccggtcagttcggtgagcagcagtacgggccctggccttgcaggctccggtgcc
tctggtgcctccggtgcctccggcaacgtggccatcccccagcgcatccatcacatggct
gctagccacgtcaacatcaccaacaacatcctccgcagctacgagcactgggacacggcc
gagaagctcgccacagagagccaagagttctttcaggatctggactcaatgatggaaccg
ttgagccaacacagcagcatgacaggactggtgcgctacatacgccaaggactgcactgg
ctacggatagaggcccacatgttatag
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integrated database retrieval system