Coregonus clupeaformis (lake whitefish): 121545554
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Entry
121545554 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM33 isoform X1
KO
K08883
tripartite motif-containing protein 33 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121545554
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121545554
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121545554
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
121545554
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121545554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
CPSF100_C
Motif
Other DBs
NCBI-GeneID:
121545554
NCBI-ProteinID:
XP_041712098
LinkDB
All DBs
Position
30:complement(27081557..27101506)
Genome browser
AA seq
1303 aa
AA seq
DB search
MADNKGEEDMESSSKLDSEPQGEDSGDPELKDVNTLIAIETNLKEGEDSQSQENVSQMPK
PANDVVSGGGDASSNSAGTGEEGSISSNVSPVWNTNGATTELKNVNAVIVTEPNSKEGED
SQSHENISQVPTPANISGGGDASSNSAGAGGEVSTSSSPVGNTNGGTTESSAAGDTAGTS
PALTTDMSPPANPVTPINLMDTCAVCKQSLQTRDCEPKLLPCLHSFCLKCIPQPERQVTV
QVPGPNGQPDTHIVNVMRCIVCCQDCKQSDIIDNYFVKDTTEACKTSDEKSAQMCTSCED
NADTIGFCAECGEWLCKTCIEAHQRVKITKDHKIRKKEDVSEESVGVSEQRPVFCPIHKQ
EPLKLFCETCDTLTCRDCQLLEHKEHRYQFLEEAFQNQKGIIETHMVKLQEKKTYVHYSH
SQVTSRIKEVTDTHKKVEHDIKIAVFTLINEINKKGKYLLQQLECVTKERSMKLLSQQTD
IANLARQILHVLNFAHSAINSGSSTALLYSKRLIIYQLRKVLKAGLEPVPQANGAVRFFC
DPTFWAKNVVNLVGNLVIEKMPQAQHPPNIMVGPISPGHGHPGHGKSPGQINLAQLRQQH
MQQQAFAQQKQQQQQHQQQQQQQHQQQQQHQQQHQQQQQHQQQHQQRIQEQMRIASQMTQ
QHPRQAVPQMVQQQPPRLISMQAQQRGPMNGGPHMYPPHHLRLPPGQGRMPSPSAQPRMP
NGQQYSPMMQPQLQRQMTVDSELSDHRFRLLHLTGHSNPGHAGPFPVASLHNVSAANPTS
PTSASMASAHAHRGPASPIVGAIDLIPSVTNPENLPCLPNIPPIQLEDAGSSSLDALLSR
YILASTYPQLGLGPPGNMNLSHGPSTHSPGSSGLSNSHTPVRPSSTSSTGSRGSCGSAGR
PGPASAPMEQQVKVKQEPGAEKECGFSGTSNVKTERGKDGGRSACMMSSPESSHTPPLPM
LGSVASGSSVQDVLKKVGEYVKTEPQDQEACSGANRPANAPITTSITSTVASATLLTNGK
GAASAALRSPRTAQGTNQSGAGGKEDDPNEDWCAVCNNGGELLCCDRCPKVFHITCHIPT
LKCSPSGEWMCTFCRSLASPEMEYQPDDEPRGEKDNSEQGLSPEDQRRCERLLLYVFCHD
LSEGFQEPVPPSIPNYYKIIKKPMDLTLVKQKLQLKHVQHYQSSKEFVSDVRLVFSNCAK
YNEMSRIIQVYDEEKQSNVQADSEVAEAGKAVSLYFEERLLELYPGESFPEVPEEAEVPE
VPEEPQAPAGEGEEADLTEDSEDEFVQPKRKRLKTDEKPMHIK
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaacaaaggcgaagaggatatggagagttcttccaaattagattcagaacct
cagggagaggatagcggagaccccgaattgaaagatgtgaatacgctgattgccatagag
acaaatttgaaagaaggagaggattcacaatcccaggagaatgtttcccagatgcctaaa
cctgctaacgacgtcgttagcggaggaggggacgctagcagcaacagcgcgggcacaggg
gaagaaggcagcattagcagtaacgttagcccagtttggaacaccaatggggcgacaacc
gaattgaaaaatgtgaatgcggtgattgtcacagagccaaattcgaaagaaggagaggat
tcacaatcccatgagaatatttcccaggtgcctacacccgctaacattagcggaggaggg
gacgctagcagcaacagcgcgggcgcagggggagaagtcagtacgagcagcagcccagtt
gggaacaccaatggggggacaaccgagtcctcggctgctggggacactgctggaacctca
ccagcactcacaaccgatatgtccccaccagccaaccccgtcaccccaataaacctcatg
gatacgtgcgctgtgtgtaaacaaagtctccagacccgtgactgtgaacctaaactctta
ccgtgtcttcactcattttgcttgaaatgtatcccccagccagagcgacaagttaccgta
caggtgcccgggccgaacggacagccagacacccacatagtgaatgtcatgcggtgcata
gtttgttgtcaagactgcaaacagagtgacatcattgacaactactttgtcaaggacacc
accgaggcctgcaagacttcagatgaaaaatctgcacagatgtgcaccagttgtgaggac
aacgcagataccattgggttctgtgcagaatgtggagagtggttgtgcaaaacctgcatc
gaggctcaccagagggtcaaaatcaccaaggaccacaaaatccgcaagaaagaggacgtc
tctgaggagtctgtaggtgtgtcggaacagaggcctgtgttctgtcccatccacaaacag
gagcccctgaaactcttctgtgaaacctgtgacacactcacttgccgggactgccaactg
ctggagcacaaggagcacaggtaccagtttctggaggaggccttccagaaccagaaaggc
atcatcgagacgcacatggtcaaactgcaggagaaaaagacctacgttcactactctcac
tctcaggtgacaagcaggataaaggaagttactgatacccataagaaggtggaacatgac
atcaagatagccgtgttcactcttatcaacgaaatcaacaagaagggcaagtatttactg
cagcagcttgagtgtgtgactaaggagaggagcatgaagctgttgtcccagcagacagac
atcgccaacctggccaggcagatcctccacgtgctcaacttcgcccactctgccattaac
agcggcagcagcaccgccctgctttacagcaagaggctgatcatctaccagctgcgcaag
gtcctgaaggctggactggaaccagtgcctcaggctaacggagctgttcgcttcttctgt
gaccccacattctgggccaaaaacgtggtcaacctagtagggaacctggtgatcgagaag
atgccccaggctcagcaccctcccaacattatggtggggcccatctccccgggccacggc
cacccgggccacggcaaaagcccggggcagatcaacctggcccagctccggcagcagcac
atgcagcagcaagccttcgcccagcagaaacaacagcagcagcagcaccaacagcagcag
cagcagcagcaccaacagcagcagcagcaccagcagcagcaccaacaacagcagcagcac
caacaacagcaccaacagaggatccaggaacagatgcgcattgcctcccaaatgacccag
cagcaccccaggcaggctgtacctcagatggtacagcagcagcccccgcgcctcatcagt
atgcaggcccagcagaggggccccatgaacggcgggccccacatgtaccccccccaccac
ctgcgcctgcccccgggacagggccgcatgcccagccccagtgcccagccacgcatgccc
aacggccagcagtactcccccatgatgcagcctcagctgcagagacagatgactgtagat
tctgagctgagcgaccacaggtttcgtttgttacatctcactgggcattcaaacccaggt
catgctggacccttcccggtggcatctctccacaacgtgagcgctgccaaccccaccagt
cccaccagtgccagcatggccagcgcccatgcccaccgtggccccgccagccccatagtg
ggcgccatcgacctcatcccctccgtcaccaacccagagaacctgccatgcctaccaaac
atcccccccattcagctggaagacgcgggctccagcagcctggacgccctcctgagtcgc
tacatcttagccagcacataccctcagctgggcctggggccccccgggaacatgaacctc
tcccacggaccctccacacactcccctggctcctcaggcttatcaaactcccacacgcct
gtgcggccatccagtacgtccagcacaggaagcaggggcagctgtggctctgcgggtagg
ccagggccagcaagcgccccaatggaacagcaggtcaaagtcaagcaggagcccggagcc
gagaaggagtgtggtttctcgggaacctccaacgtcaaaacggaacgagggaaggatgga
gggaggagcgcgtgcatgatgagtagtccagagagcagccatactccccctctccccatg
ttgggctctgtggcttctggttcctctgtccaggacgtcctcaagaaggtgggggagtac
gtcaaaactgagccccaggaccaggaggcctgcagcggggccaacaggcctgcgaacgcc
cctatcaccaccagcatcacatccactgtggcctcagccacactgctgaccaacggcaag
ggagccgcatccgctgccctgcgctctccacgcactgcgcaggggaccaaccagagcggg
gcaggagggaaggaggacgaccccaacgaggactggtgcgccgtgtgcaacaacggggga
gagctgctttgctgcgaccgctgccccaaagtcttccacatcacctgtcacatccccacc
ttgaagtgctccccgagtggagagtggatgtgcacgttctgccggagcctggccagcccg
gagatggagtaccagcctgacgacgaacctcgtggcgaaaaggacaacagtgagcagggc
ctgagtcctgaggaccagaggaggtgtgagcgcctcctgctgtatgttttctgccatgat
ctcagtgaggggttccaggagcctgtccctccctctatccctaattactacaagatcatc
aagaagcccatggacttgaccctggtgaaacagaagctacagttgaagcatgtccagcac
taccagagctcgaaggagtttgtctcggatgtgcgcctggtcttcagcaactgtgccaag
tacaacgagatgtctcgaataatccaggtttatgatgaggagaaacagagtaatgtgcag
gcggactcagaggtggcggaggcagggaaagccgtgagtttgtactttgaggagaggctg
ctggagctctacccaggtgagagtttccccgaggtaccagaggaggccgaggtaccagag
gtacctgaggagccccaggccccagctggagagggggaggaggcggatctcacagaagac
tccgaggatgagtttgtgcagcctaaacgcaagcggttaaaaacggatgaaaagccgatg
cacatcaagtga
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integrated database retrieval system
