Coregonus clupeaformis (lake whitefish): 121545732
Help
Entry
121545732 CDS
T08357
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121545732
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121545732
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121545732
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121545732
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121545732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
RET_CLD1
LapA_dom
Motif
Other DBs
NCBI-GeneID:
121545732
NCBI-ProteinID:
XP_041712453
LinkDB
All DBs
Position
3:complement(3832150..3837436)
Genome browser
AA seq
886 aa
AA seq
DB search
MNWAVLIQNVLVMVHLRQILCYGSVRISVPEEQEAGVWVGSIGSTSPPPYQLLTQVYLRV
DQGTGDVYTTDHRMDREVLCPDQPQAGECIVPHDAIVGPEAELVKFMVVVEDINDHTPHF
DNTEIHLSVSEDVAVGTSFLLDDRAEDRDIGRNGQLQYHLEGAGGFFSVTVEEEEEAAIL
FLVVRQGLDREKQDLHEMTLVATDCSFTPLSATATLFIKVTDVNDNCPKFTLDSPQKVVI
TVDTPRDTAVARVRATDLDLGPNAAITYSLSPKISERARELFSLDSHTGLISLRGDLRDR
HSDSVSVSDRGEEVVLKVLASGPHCPPADTQVTVSLLPAPYQENGIKIRFIAEHQNQTIV
LQENQPPTVLALLELPGNTSSVRGSSSLSIEGEVPFSLSLQNGKYLLSTSKPLDYEMKSE
YHVSVVMRGGVGETAAQGFPRRVIRVRVVDVNDNAPQFLQSHYLIDIEENNPAGAFLLKV
RAQDADSSQNGQVTYKLGRPSHTAAVAAAAIFRIDQNTGQLTVSVPLDREQQDVHRLTVV
ARDNGVPPLESSATVTITVLDQNDNAPVFLTPHFIFFIPENIPPLAQVGKVGVSDLDAGL
NGEVEVRVVNSSVGPFVIDNAQGMLRCMADVDREKQDRYELDLLATDNGRPSPLTSVARV
TVFIEDVNDNQPQVILPSSNLSCLTISTGTTTGTMVTKIYAIDKDSGLNSEITYTIAARE
PPGTYPSSHQHGDSSSSPFQLGARSGNVTLAQRLMGKDLGMHHLFIVVTDGGKPVPLHTT
IWVNLLVNDTLEPCHLDIMPRSLPYRPAQTPPETPSEMPVCDRHAQLILLLGLGMMVASL
CLFLVTVVLYMKQRKRSRGERQQRRQVKENQIPLRIQERYSSGEAL
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaactgggctgtactcattcagaacgtactggtcatggtccatctcaggcagatcctg
tgctacggttccgttcggatctcagttccagaggagcaggaggctggggtctgggtcggg
tccatcgggtccacgtccccccccccctaccagctcctgacccaggtctacctcagggtg
gaccaggggacaggggatgtctacacgaccgaccacaggatggaccgagaggtcttgtgt
cctgaccaaccccaggctggggagtgtatcgtcccacacgacgccattgtgggccctgag
gcagagctggtgaagttcatggtggttgtagaggacatcaatgaccacactcctcacttt
gacaacactgagatccacctgagtgtctctgaggatgtggctgtggggaccagtttctta
ttggacgaccgggcagaggacagagacattggacgtaacggacagctgcagtaccaccta
gagggagccggtgggtttttcagtgtgacagtagaagaagaagaagaagcggccattttg
tttttggttgtgcgacaaggactagaccgcgagaagcaggatcttcatgagatgactcta
gtggccacagactgtagctttactccactaagcgccacagcaactttattcataaaagtg
actgacgtgaacgataactgcccaaagtttacactggacagcccccagaaggtggttatt
acagtggacacacccagagacacagcagtagccagggtcagagccacagacctagacctg
ggccccaacgctgctataacctactccctcagccccaagatctcagaacgggccagggaa
ctcttcagtctggacagtcacactggcctgatcagcctgagaggagacctcagagaccgc
cacagtgacagtgttagtgttagtgacaggggagaggaggtggtgttgaaagtgttagcc
agcggcccccactgcccccctgcagacactcaggtaaccgtatccctgctccccgcgcca
taccaggagaatggcataaagatcaggttcatagcagagcatcaaaaccagacaatagtg
ttacaggaaaatcagccccccactgtcttggctttgctagagctgccggggaacactagt
agtgttagaggctcatcgtctctctcaattgaaggagaggtgccgttttctttgagcctg
cagaacggcaaatatctcctgtcgacatcaaagcccttagactacgagatgaagagtgaa
tatcatgtttctgtagtgatgcgtggtggtgtcggggagactgcagctcagggcttccct
aggagagtgatccgggtgagggtggtggatgtgaatgataatgctccacagtttctccag
agtcactatctgatagacatagaggagaataaccctgctggggcgtttctgcttaaagtc
agggcgcaggatgcagacagcagtcagaacgggcaggtcacctacaaactgggccgacca
tcacacacagcggcagtggcagcggcagccatttttagaatcgaccagaacacaggtcag
ctgacagtttctgtacccctggacagggaacaacaggacgttcacagactgacagttgta
gccagagataatggcgttcctccattagagtcctctgcgacggtgacgatcaccgtcctg
gaccagaatgataacgctcctgtcttcctcacccctcacttcatctttttcatccctgag
aatatacctcccctggcccaggtggggaaggtgggggtgtcggacttggacgcagggctt
aacggagaggtggaggtgagggtggtgaacagcagtgtcggccccttcgtcatagacaac
gcccaggggatgctgcgctgcatggccgacgtcgaccgcgagaaacaggaccgctacgag
ttagatctccttgccaccgacaacggacgcccgtcacctctgacctccgtcgccagggta
accgtgttcatcgaggatgtcaacgacaaccagccccaggtcatcctacccagcagcaac
ctgtcgtgtctcaccatctccacggggaccaccacgggcaccatggtaaccaagatctac
gccatcgacaaggactcagggttaaactctgagatcacatacaccattgcagctcgggaa
ccaccgggcacctatccatcatcccatcagcacggtgacagcagcagcagtcccttccag
ctgggcgctcggtccggtaacgtgaccttagcccagagactcatgggtaaggacctgggg
atgcaccacctgttcatcgtggtgactgacggtgggaaaccagttcccctccacaccacc
atctgggtcaacctgctggtcaacgacaccttggaaccatgccacctggacatcatgcca
agatccctgccctatagaccggcacagacgccccccgaaacaccctctgagatgcccgtc
tgcgacagacatgctcagttgatcctgctgctaggcctgggcatgatggtggcctcgctc
tgtctgtttctggtgacagttgttttatacatgaaacagaggaagagatctagaggagaa
cggcagcagaggaggcaggtaaaggagaatcagattcctctacgcattcaggagagatat
tcttcaggagaagcgttataa
DBGET
integrated database retrieval system
