Coregonus clupeaformis (lake whitefish): 121546010
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Entry
121546010 CDS
T08357
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121546010
04120 Ubiquitin mediated proteolysis
121546010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121546010
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121546010
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
U-box type E3
121546010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
121546010
NCBI-ProteinID:
XP_041712906
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All DBs
Position
30:complement(7771292..7872773)
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AA seq
1182 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGGTPQPLPPAASHAL
GLNVQSVTPATSPMGASGVAYCSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDTASC
EKSSMSQVDVDSGIENMEVEDSDRREKRNLAEKESAENSDVSEEQALQLICKILRVSWKE
QDRDVIFLPSLAAEFHQSSPKDVYSDFKDLIGQILMEVLMMSTMSHVHNPFASLTATSQP
IAAAKSPDHHLTLVQPSSQGGSPMAPCAGSFGASSLSSLGASGGGMASESCGDRFSIEAC
KETEMLNYLIERFDSVGMEERKAPKICSHPSVSQLLSNIRSQCISHAALVLQGALTQPRS
PLQQSLLVPYMLCRNLPYGFIQELARMTHQEEVFRQIFVPILQGLGLAVKECSFDSDNFK
FPLMALAELCEIKFGKTHPMCNLMTSLPLWCPKSLSPGMGREVQRLSFLGAFFSLSVFAE
DDTKVGDKYFSGPAITMENTRVVSQTLQHYLESARGDLFKILHNILLNGETREVALNYMA
ALVNRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLETVDPYYIFHPRCRLQVSR
EETRLKATMEELNTWLAEMQDDPSKLYDPKFPTECFFLTLHTHHLSILPGCRRYIRRLRA
IRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVRSKACADAGLLDENVLRR
CLQFYSMVIQLILRMVDPAYPHMTLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQV
LYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFSEMMENHPLS
VKLLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSGKQ
FVRYINMLINDTTFLLDESLESLKRIHEVQEEVKNKEQWDQLPREQQQSRQSQLTQDERV
SRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPE
KYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTIAIE
KFKLLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVILPSGNIMDRAIILRHL
LNSSTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttgagtgccgacgagatccgcaggaggagactggccagactggcaggagga
caaacatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggccc
cttcctgggacctcagggggcacaccccagccccttccaccagccgcctcacatgcactg
ggactcaatgtccagagtgtcacccccgccacctctcctatgggcgcctctggtgtggcg
tactgcagtcagagcagcgagggcgtgagctccctctccagctctccctccaacagcctg
gagacccagtcccagagtctgtccagatctcagagcatggacattgacaccgcctcctgt
gaaaagagcagcatgtcccaagtggacgttgactcagggatagagaacatggaggtggag
gacagtgaccgcagggagaagaggaacctggctgaaaaggaatccgctgaaaactcagat
gtctctgaagagcaggctctgcagctcatctgtaagatcctgcgtgtctcctggaaggag
caggacagagacgtcatctttctcccctcgcttgctgccgagttccaccagagcagcccc
aaagacgtctactctgacttcaaagacctgattggccagatcctgatggaggttctcatg
atgtccaccatgtcgcacgtccacaaccccttcgccagcctgaccgccacatcccagcca
attgctgctgccaaatctcccgaccaccacctgacgctggtccagccctctagtcagggc
ggcagtcccatggccccctgtgcaggctcgtttggggccagctctctgtccagtctgggt
gcgtctggagggggaatggcctcggaatcctgcggcgaccgcttctccatcgaggcgtgc
aaggagacggagatgctcaactacctcatcgagcgcttcgacagtgtgggcatggaggaa
aggaaggcgcccaagatttgcagccaccccagtgtcagccagctcctcagcaacatacgc
tcacagtgtatttcccacgccgctcttgtccttcagggcgctctcacacagccaaggagc
cccctgcagcagtccctgctggtgccctacatgctgtgccgaaacctgccgtatggcttt
atccaggagctggcccgcatgacccaccaggaggaggtcttcagacagatcttcgttcca
atccttcaagggctgggcctggccgtgaaagaatgttccttcgacagtgacaactttaaa
ttccccctcatggctttagctgagctctgcgagataaagtttgggaagactcaccccatg
tgcaatttgatgacttctctgcccctgtggtgtcccaagtctctgagcccggggatgggc
cgagaggtccagagactgtccttcttgggagcgttcttcagcttgtcggtctttgcagag
gatgacaccaaagtgggtgacaagtacttctcgggcccagccatcaccatggagaacact
cgcgtggtcagccaaaccctgcagcactacctggagtcagcccggggtgacttgtttaaa
atcctccacaacatcctactgaacggagagacaagagaggtagcgctcaactacatggca
gctctggtcaaccgcaatgtgaagaaagcccagatgcagacggacgacaagctggtgtcc
acggacggcttcatgattaacttcctgtcggtgctgcaacagctgagcatgaagatcaag
ctggagactgtagacccctactacattttccacccccgctgccgcctgcaggtcagccgt
gaggagacccggctcaaggccacaatggaggagctcaatacctggctggctgagatgcaa
gatgacccctccaagttatatgatcccaagttccccacagagtgtttctttctgacgttg
cacacccaccacctgtccatcctaccgggctgccgacgctacatccgcaggctgagagcc
atccgcgagctcaacaggacggtggaggagctgaagaatagtgagagccagtggaaggac
tctccgctggccagccgacacagagagatgctgaagagatgcaaaacccaactcaagaaa
ctggtacgctccaaagcctgtgctgatgcgggtcttctggacgagaacgtgttacgcaga
tgtctgcagttctacagtatggtcattcagctcatcctacgcatggtggatcctgcctac
ccacacatgactctaccgttgaatccggagatccccaaaagctttgctgctttgccggag
ttttacattgaagatgtggcagagttcctgctttttgttgtgcagtattcccctcaggtt
ctgtatgagccctgcgtccaggatattgtcaccttcctggtggtgttcatctgcagtcag
aactacatccggaacccctacctgatcgccaagctggtggaggtgctgtttgtcaccaac
ccggccgtgcagccgcgcacccagcgcttctctgagatgatggagaaccaccccctgtcc
gtcaaactgttggtcccagccctcatgaagttctacactgacgtggagcacaccggtgcc
accagcgagttctacgacaagttcaccatccgctaccacatcagcaccattttcaagagc
ctctggcagaacatgggccaccacggcactttcctggaagagttcaactccgggaagcag
tttgtgcgttacatcaacatgctgatcaacgacaccaccttcctgctggacgagagcctg
gagtccctgaagcgcatccatgaggtccaggaggaggttaaaaacaaggagcagtgggat
caacttcccagggagcagcagcagagccgccagtcccagttgacccaggatgagcgggtg
tcgcgctcctacctggccctggctacagagacggtcgacatgttccacatcctcaccaag
caggtccagaagcccttcctccggcccgagttggggcctcgtctggcggccatgctgaac
tttaacctccagcagctgtgcgggcccaagtgccgggacctgaaggtggagaatccagag
aagtacggttttgagcccaagaagctcctagaccagcttactgacatttacctgcaactt
gactgtgcccgcttcgccaaggccatcgccgacgaccagcggtcatacagccgagagctc
tttgaggaagtgatttccaagatgaagaaagccggcatcaagtccaccatcgccattgaa
aaattcaagctgctatcggagaaggtggaggagatagtcgccaggaactctcagtccgaa
atggactacagtgacgcacctgatgagtttaaagaccctctgatggacaccctaatgact
gaccctgtgatactgccctctgggaacatcatggaccgagccatcatcctccgccacctt
ctcaactcctccactgacccctttaacagacagcctctcaacgaaagcatgctggagtca
ctccctgaactgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgt
ttcctctag
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