Coregonus clupeaformis (lake whitefish): 121546030
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Entry
121546030 CDS
T08357
Name
(RefSeq) laminin subunit beta-2-like isoform X1
KO
K06243
laminin, beta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121546030
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EzrA
Alanine_zipper
TPR_MLP1_2
ATG17_like
Motif
Other DBs
NCBI-GeneID:
121546030
NCBI-ProteinID:
XP_045065519
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Position
30:complement(43202919..43270347)
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AA seq
1797 aa
AA seq
DB search
MHATLVIFICALAYATAQGPDHAHGCTHGSCYPATGDLLVGREKSLKASSTCGSRKKEPY
CIVSHLQDEKKCFQCDSRRPYDPVYNTISHRIENVITTFKPHRKKSWWQSENGKPNVFIQ
LDLEAEFHFTHLIMTFKTFRPAAMVIERSADFGRNWQVYRYFAYDCASVFPGISKGPLRK
VDDVTCESRYADIEPSTEGEAIYRVLDPAIRIEDPYSPNIQNQLKITNLRVNFTKLHTLG
DNLLDSRAEIKEKYYYAMYELVVRGNCFCYGHASECAPIDGIKDEEGMVHGRCVCKHNTK
GLNCELCDDFHNDMPWRPAEGRNTNACKKCNCNGHSNQCHFDMAVYLSTGNANGGICDDC
LHNTMGRTCEMCKPFYYQDPSRDIRDPGVCTACDCDPHGSLNEGICDGLDMPSLGMVAGQ
CRCKDHVEGPRCDKCKSGFFSLRAENPRGCQPCQCDPRGTVSERPQCDPVSGDCFCKRQV
TGRSCGQCLPEHWALSHDLNGCRDCDCDVGGATDNHCSMENGQCRCRSHMTGRQCTQVES
GYFFMALDHYTYEAELALLGPVCSVAQREHQPGRPTTWTGAGFAKVPEGSSLEFSINNIP
YSMEYDLLIRYEPQMPQDWEEVRVTIVRPGPIPTSSPCGNTIPADDMLTVSLPAGSRFVV
LPQSICLERGVSYTLRFEFSHYLDRNSVLIPGTTAANILVDSISLLPRYSSLEMFIGGDP
ASIARKQSYERYRCHEGAKSVTRPQISEVCAKLITSMSAIINDGALACQCDPQGAVSSVC
DMRGGQCRCRPNVIGRRCDRCAPGTYGFGPAGCKACECSLEGTVTRFCDQLTGQCPCHQG
AFGQQCDGCQAGHWGFPNCKQCLCNGHAEECHQRTGACLNCRDNTGGDKCDRCAKGYYGN
PVLGTGNGNQCRPCPCPDGPNSGRHFATSCHQDNRNRQVVCNCNQGYTGGMVKRSEGSFK
RSRCEECAPGYYGNPSQPGGRCQPCRCSNNIDMSDLDACDRRTGECKKCLYNTEGPDCGV
CKSGYYGDASRRNCRKCTCNFLGTEQSQCTARDECVCQRATGQCQCLPNTIGLTCDHCKP
NYWNLASGRGCEACSCEPNNAVNPACNEFTGKCQCRDGFGGKTCTDCQENYWGDPRIQCR
ACDCDPRGIETSQCGQKSGHCVCQQGVSGVRCDQCARGFSGQFPNCQPCHQCFGDWDRVV
QNLAVRTKTLSERALEIQTTGLTGAYEKAFRELEEKLALAQGIVNARNTTAEAVGSLMEL
IEDLRSQIGETTDALNHLEGDLTSVGNSNVEASNELSALEREAKELKLTSDQLHRQLDIL
KNSNFLGAYESIRSSYNKSRDAEQRANQSTTTTPSTVSQSADTRRKTEHLISAKKDGFNR
KNAANKRALGDLNAKAQTLDMKKINEKVCGAPGDAPCAESHCGGAGCRDDEGNRHCGGLN
CNGAVAVADNALERSKHAEKELNKAMGEVEQLFHKVADAKSKAEEAKGKAQAALDKATNT
KNKVERSNNDLRDLIKQIRDFLMQEGADPDSIETVANRVLELSIPASPQQIRHMAEEIKD
RVRSLSNVDAILKQTQDDVRKAEQLLQEAKKARNRADGVKSTAEMVKQALEDAKTAQAAA
QKTIQRAKADIGETEARLAQIVSQTTSSEHDLNDAMDRLGNLGREIDGLKLKRANNSMAA
ARAEETATMARDKANDAKQILDGELTDKYHTVQDLVDRKAKTVQEAKKKAERMRDEAKEL
LKDAQNKLRRLAELEKDYEENKKTLEGKARQLDGLEDKMKAILNDINKQIQIYNTCQ
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcgacactggtaatttttatctgtgccctggcctatgccaccgcccaggggcca
gaccacgcccacggctgtacccatggcagctgttaccccgcaacgggagatctgttggta
ggccgtgagaagagcctgaaggcctcgtctacctgtggctccaggaagaaagagccttac
tgtattgtcagtcatctacaggatgagaagaaatgtttccagtgtgactctcgccgacca
tatgaccctgtctacaacaccatcagtcaccgcattgagaacgtcatcacaacgttcaaa
ccacaccgcaagaagtcctggtggcagtcagagaatggaaagcctaatgtcttcattcag
ctggaccttgaggcagaattccatttcactcatcttatcatgacctttaagacgtttcgc
ccagcagccatggtgattgagcgatcggcagattttggacgtaactggcaggtgtaccgc
tactttgcctacgactgtgcctcggtcttccccgggatatccaaaggtcccctgcgcaag
gtggatgatgtcacctgtgagtcccgctacgctgacatcgagccatccacagagggagag
gcgatctacagagttctggaccctgccatccgcattgaggacccctacagccccaacatt
cagaaccagctgaagatcactaacctgcgtgtgaacttcaccaagctgcacaccctgggt
gacaacctgctggactcccgcgctgagatcaaggagaagtactactatgccatgtatgag
ctggttgtccgcggcaactgcttctgctacggccacgcctccgagtgtgcccctattgat
gggatcaaggatgaggagggcatggtccatgggaggtgtgtgtgtaagcacaacaccaag
ggtctgaactgtgagctgtgtgacgacttccataacgacatgccctggagaccggctgag
ggacgcaacaccaacgcctgcaagaaatgcaactgtaatggccactccaaccagtgtcac
tttgacatggcggtgtacctgtccacgggcaatgccaacggtggcatctgtgacgactgt
ctccacaacaccatgggacgtacctgtgagatgtgtaaacctttctactaccaggacccc
agcagggacatcagagacccaggagtctgtactgcctgtgactgtgatcctcatggttcc
ctgaacgagggcatctgtgacgggcttgacatgccgtccctgggcatggtcgctgggcag
tgccgctgtaaggaccacgtggagggacctcgctgtgacaaatgcaagtctggcttcttc
agcctgagagcagagaatccccgtggctgccaaccctgccagtgtgaccccaggggtacg
gtgtcagagagaccacagtgtgatcctgtgagcggggactgcttctgcaagcgccaggtc
accggacgcagctgtggccagtgtctgccagaacactgggcactgagtcacgacctgaat
ggatgcagagactgtgactgtgatgtgggcggggccacagataaccactgctcaatggag
aacgggcagtgtcgctgtcgtagtcatatgacgggccgtcaatgtacccaggtggagtct
gggtactttttcatggctctggaccactacacctacgaggctgagctggccctgctggga
ccggtctgcagtgtggcgcagagggagcaccagcctgggcgccctaccacttggactggc
gctgggtttgccaaggtccccgagggcagcagcctggagttctccatcaacaacatcccc
tactccatggagtacgacctcctcatccgctatgagccacaaatgccgcaggactgggag
gaggtccgtgtgacgattgttcggccagggcccattcccaccagcagtccatgtggaaac
accatccctgcagacgacatgctcactgtgtccctgcctgcagggtccaggtttgtcgtg
ctgcctcagtctatctgcttggagagaggagttagctacactcttcgctttgagttcagt
cactatctggaccggaacagtgttctcattcccggtacaactgctgccaacattctagtg
gactctatctcccttctccctcgttactcctcactggagatgttcatcggcggagacccc
gcctccatcgcccggaagcagagctatgagcgctaccgctgccacgagggggccaagagc
gtgacacgcccccagatcagtgaagtctgtgccaaactcatcaccagcatgtcagccatc
attaacgatggagctttggcttgccagtgtgacccccagggtgcagtcagctcagtgtgt
gacatgcgcggaggtcagtgtcgctgtaggcccaatgtgattggacggcgctgtgaccgg
tgtgctcctgggacgtacggctttggaccggcaggatgtaaagcctgtgagtgtagtctg
gaaggtacggtcactcggttctgtgaccagctgactgggcagtgcccgtgccaccagggt
gcgtttggccagcagtgcgatggctgccaggcaggacactggggcttccccaactgtaag
cagtgcctgtgtaacggacatgctgaggagtgccaccagaggaccggagcatgtctcaac
tgcagggacaacactggaggggacaaatgtgacaggtgtgccaaaggttactacggcaac
ccggtgctgggcacaggtaacggtaaccaatgccggccctgcccctgcccggatggccca
aacagcggaagacacttcgctacctcctgtcaccaggacaaccgcaacagacaggtggtc
tgcaactgtaaccaaggatacacaggggggatggttaagcgctccgagggctccttcaag
cgttcccggtgtgaggagtgcgcccctggttactatggtaacccctcccagccaggtggg
cggtgccagccgtgcaggtgcagtaacaacattgacatgtcagacctggatgcatgtgac
cggaggacaggagagtgtaagaagtgtctctacaacacagagggaccagactgtggcgtg
tgcaagagcggttactatggagatgcctcgcgacgcaactgcagaaagtgcacctgtaac
ttcctgggcacagagcaaagccagtgtacagcgcgggatgagtgtgtctgccagcgtgcc
acggggcagtgccagtgtctacccaacactatcggcctgacatgtgaccactgtaagccc
aactactggaacctggctagtgggcggggctgtgaggcctgcagctgtgaacccaacaac
gctgtaaacccggcctgcaacgagttcacaggaaagtgtcagtgtcgtgatggatttggt
gggaagacctgcacagactgccaagagaactactggggcgaccccaggatccagtgcaga
gcctgtgactgtgacccccggggcatagagacctctcagtgtggccagaagtcaggccac
tgtgtgtgtcaacagggggtgtcgggcgtgcgttgtgaccagtgtgcccggggcttctca
ggccagttccctaactgccagccctgccaccagtgcttcggggactgggaccgggtggta
cagaacctggctgtccgaaccaagaccctgtcggagcgggctctggagatccagaccacg
ggcctgactggagcctatgagaaggctttcagagaactggaggagaagctggcactggcc
cagggcatcgtcaacgcccgcaacaccaccgcagaggcagtcggcagcctgatggagctc
attgaagacctcaggtctcagataggggagaccacagacgcactgaatcatctggaggga
gacctgaccagtgtggggaacagtaacgttgaggccagtaatgagctcagtgctctggag
agagaggccaaagagctcaagttgacctcagatcagctccaccgccaactggacatcctc
aagaactccaacttcctgggagcatatgaaagcatccgcagctcctataataagtcccgt
gacgcagagcagcgagccaaccagtccaccactaccacgcccagcactgtcagccaatca
gcagacacccgccgcaagacagaacacctcatctctgccaagaaagacggcttcaaccgc
aagaacgccgccaacaagcgagccctgggggacctcaatgccaaggcacaaaccctggac
atgaaaaagatcaacgagaaggtctgtggggcccctggcgatgccccctgtgcagagagc
cattgcggaggggcaggttgccgtgacgacgaggggaacaggcactgcggtggcctgaac
tgcaacggtgctgtagcggtggcagataacgccttggagaggtctaagcatgcagagaaa
gagctgaacaaagccatgggggaggtagagcagctcttccacaaggtggcagatgccaag
agcaaggcggaggaggcaaagggtaaagctcaggcagctctggacaaggccactaacacc
aagaacaaggtggagcgctccaacaacgacctgcgggacctcatcaagcagatacgggac
ttcctcatgcaggagggtgctgatccagacagcattgagacggtagctaaccgtgtcctg
gagttgtccatcccagcctcaccacagcagatcagacacatggcagaggagatcaaggac
cgggtccgaagcctctccaatgtagacgccattctgaaacagacacaggacgacgtgcgc
aaagcagagcagcttctgcaggaggccaagaaggccaggaatcgggcagacggggtgaaa
tccacagcagagatggtgaaacaggcactcgaggacgctaagacggcccaggctgcagcg
cagaagaccatacagcgggctaaggcggacattggtgaaacggaggcccgactagcacag
atcgtgtctcaaaccaccagcagtgaacatgacctgaatgatgccatggaccgcctgggc
aacctgggtcgggagattgatggtctgaaactcaaacgtgcaaacaacagcatggcagca
gctcgagctgaggagacagccactatggcacgggacaaagccaatgatgccaagcagatt
ttagatggcgagctgacagataagtatcacacagtgcaggacttggtggacaggaaagcc
aagaccgtccaggaggccaagaagaaagcagagcgcatgagagacgaggccaaggagcta
ctaaaagatgcccagaacaagctccggagactagcagaactagagaaagactatgaagag
aacaagaaaacgttggagggcaaagcccggcagctggacggcctagaagacaagatgaag
gctatcctcaacgacatcaacaaacagatccagatctacaacacctgtcagtaa
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