Coregonus clupeaformis (lake whitefish): 121546078
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Entry
121546078 CDS
T08357
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121546078 (ddx20)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121546078 (ddx20)
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
121546078 (ddx20)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-GeneID:
121546078
NCBI-ProteinID:
XP_041713027
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All DBs
Position
30:complement(46613575..46625099)
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AA seq
841 aa
AA seq
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MASSMKKAAHDIETRKRTDDVVLSDGIDFNALLLSQPVLDGLAASGFKKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSTIALDSLVIENTTTQVLVLAPTREIAVQIHSVVMAIGS
AMEGLQCHVFIGGTPVSQDKISLKKCHIAVGSPGRIKQLIELGLLATASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLVHYMREPTFVRLNPSDPGLIG
LKQYYRLVHSHAMPHKVFEEKVLHLLELFSKVPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGSLSQDQRMEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENKMMAIAQKCNLILCALPDPIEPGLMQEPCDWDITV
EALTQGTNSQVFPKTEKRRRAKTESPAPKPSREQDQDQDPSPVYPERTEPSRPGKSQHTA
RPGAKAGPKPKNVSPALDVLLPAPRASVGPGASLALSRKEQQDALPKIPPLSAFKSQRSG
IMTFQQAELDFQSFIREGLGRTVEVIRQFRGHGDDGEGFNGQHSYEESHTLQNDYVPLTH
THMTRNGERPPTRTQPPLKANSDPSTLESTSDGSSSDSDMEEDRQADESTQSSADQSRAA
EHKPIMPIQTQSAQQSTVVDLARKPKFAPPRSHPNSPSVPQPSHHRFPRPEGRAVSTNPG
EGEPSLGKAKGREAAAQQWRGETAKKVKREKERDILEESWRKVPENRGSDRKRDGGSEVV
EEENGEGYEGYWRAYYRAWEDYYASMPPSHHQGYHGYHSMASSWMAAYRMNSVYMEELLK
H
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccatgaagaaggctgcccacgatattgaaacgcgaaaacggactgatgat
gttgtcttgtcggacggtatcgacttcaacgccctgctgttgtcgcagcccgtgctagat
ggactggcggcttctggattcaagaaaccgtctccaatccagctcaaagccattccgttg
gggcgatgcggactcgatctgatagtgcaggccaagtctggcacagggaagacctgtgtg
ttctctaccatcgccctggactctctggtgattgagaacactaccacacaggtgctggtg
ctagccccgacccgtgagatagcggtgcagatccactctgtggtgatggctataggcagt
gccatggagggcctgcagtgtcatgtcttcattggggggacgcccgtcagccaggacaag
atcagtctcaagaagtgccacatcgctgtgggatcaccaggacgtatcaagcagctgatt
gagctgggtctgttggctaccgccagcatccgtctgtttgtgctggacgaggctgacaaa
ctactggaggaaggcagcttccaggaccagatcaattggatcttctcctctctgccggtc
aacaaacagatgttggccctgtctgccacctacccagaatcccttgcccagcacctggtc
cactatatgagagagcccaccttcgtcagacttaacccctccgaccctggactcataggg
ttgaagcagtactacaggctggttcactcccatgccatgccccataaggtgtttgaggag
aaggttctacacctgctggagctgttcagtaaagttcccttcaatcaagctctggtgttc
tccaacctgcacaccagggctcagcatttagcagacatcctgtcctcaaagggccttcct
gcagtctgtatctcaggtagtctgagtcaggaccagagaatggaggccatgtctaaactg
aagcagtaccagtgtagagtactcatctctactgacctgacctccaggggtatagatgct
gagaaggtgaatctggtgatcaacctggatgttcctcaagactgggagacctacatgcac
cgtataggacgagccggacgctttggtacacacgggctggcggtgacctactgttgccat
ggcgaggaggagaataagatgatggccatcgctcagaagtgcaacctgattctttgcgct
ctaccagaccccatagagccagggctgatgcaggagccctgtgactgggacatcactgtg
gaggccctgacacaagggactaactcccaggtgttccccaagacagagaaaaggagacgg
gctaagaccgaatccccagcccctaaaccctccagggaacaggaccaggatcaggacccc
agccctgtctacccagagagaactgaacccagccgaccaggtaagagccagcacacagcc
aggcctggggctaaggctgggccgaagcccaaaaatgtgtcccctgccctggatgtcctc
ctacctgctcccagggcttcagtaggccctggggcctccctagctctctcccgtaaagag
caacaggatgccctgcccaagatccctccgctcagcgccttcaagagtcaaaggtcaggg
atcatgaccttccagcaggcagagctggacttccagagcttcatcagggaggggctgggg
aggacggtagaggtcatccgacagttcagaggtcacggagacgacggcgagggatttaac
ggtcagcacagctacgaggagtctcacacactccagaatgactatgtgccgctcacacac
acacacatgacacggaacggagagcgtccaccaacacgcacacagccgcctctaaaggcg
aactctgacccctcaactttggagtcgacctctgatgggtccagctctgactcggacatg
gaggaagaccggcaggctgacgagtcgacgcagagctccgcagatcagtccagagcagct
gaacacaaaccaatcatgccgattcaaactcaatctgcacagcaatccacagtcgtggat
ttggccaggaaaccaaagtttgcgccacctagaagccatcccaactcaccatctgtaccc
cagcccagccaccacagattccccagaccagaggggagagctgtgagtacaaaccccggg
gagggtgaaccttcattggggaaggcaaagggcagagaggctgcagcacagcagtggagg
ggggagacggcgaagaaagtcaaaagggagaaggagagagatattttagaggagagctgg
aggaaggtgcctgagaatcgagggagtgacaggaagagggatggagggagtgaggtagtg
gaggaggagaatggagagggttatgagggctactggagggcctactacagagcttgggag
gattactacgcctccatgcccccctctcaccaccagggttaccatggctaccacagtatg
gcctccagctggatggctgcctaccgtatgaactctgtgtacatggaagaactgttaaaa
cactaa
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