Coregonus clupeaformis (lake whitefish): 121546107
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Entry
121546107 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121546107
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121546107
Spliceosome [BR:
cclu03041
]
Complex C
Other components
Complex C specific factors
121546107
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
AAA_7
Cas3-like_C_2
AAA_30
PG_binding_1
AAA_23
ATPase
Motif
Other DBs
NCBI-GeneID:
121546107
NCBI-ProteinID:
XP_045079522
LinkDB
All DBs
Position
11:complement(53667141..53687692)
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AA seq
697 aa
AA seq
DB search
MCDVEAKMAAPLSTMKFWKPGSEAPGISEEREVTTETTGSPIIFNPHTALSIEKQRQNLP
VFKHRNNILYLVESYQTVIIVGETGCGKTTQIPQYLLEAGWAAEGKVIGVTQPRRVAAIS
VANRLAEERGALLGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADPLLKKYSVLML
DEAHERTLYTDIAIGLLKKIQKKRRDLRLIVASATLDAKKFQEFFNLNETGDPNKDTCGI
LTVEGRTFPVDVFYTVSPVPDYVKATVETVMKIHETEDDGDVLAFLTGQEEVEKVVSLLQ
EQARALGRLGMKKYLKVLPMYAGLPYADQMKVFERTPPTVRKVVVATNIAETSITINGIV
FVIDCAFVKLRAYNPCTAIESLVVTPISKASASQRAGRGGRNRAGKCFRLYTEEDFEKLP
ASTVPEMQRTNLAPVILQLKALGIDNVLRFSFLSPPPAQSMVQALELLYALGGLDQYGRL
TDPMGVRMAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFMVPANQKKPAAREH
RKFAVAEGDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLLRAMTVREQLRRLMNKFKVP
RTSSEGDPDVILRCIVSGFFANAARMHHSGSYRTLRDDRELHIHPNSVLFGEKPTKWVVF
NEVVQTSKYYMRDVTAVESSWLVELAPHFYKEASTGH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacgtagaagccaagatggcggcccccctctccacgatgaaattttggaaaccg
ggttcggaggcccccgggatatcggaggagcgggaggtcacgacagaaacgactggttcc
cccataattttcaaccctcacaccgcactgtccatcgagaagcagcgacagaatctacct
gttttcaagcacagaaacaacatcctctacttggtggagagttaccagacagtgatcatc
gtaggagagacaggatgtgggaagactacacagatcccccagtatttgctggaggctggc
tgggcagctgaggggaaggtgattggtgtgacacagcctcgtagagtggctgctatatca
gtagccaaccgtttggcagaagagcgtggagccctgttggggcatgaggtgggctatacc
atccgctttgatgactgctctgatccccatgccacccgcattaagttcctgacagatggg
atgctggtgagagagatgatggctgatcctctactgaagaagtacagtgtcctaatgctc
gacgaggcccatgagagaaccctctacacggacatagccatcggcctgctaaagaagatt
cagaagaagcgcagagacctcaggctgatagtggcctcagccaccctggatgccaagaaa
ttccaagagttctttaacctgaatgagactggagatcctaacaaggatacgtgtggaatt
ctgacggtggagggacgcaccttccctgttgacgtcttctacactgtcagcccagtccca
gactatgtgaaggccacagtggagacggtgatgaagatccatgagactgaggatgatgga
gatgttctggccttcctcactggacaggaggaggtggagaaggtggtgtctctgctccag
gagcaggccagagctctgggccgtctcggcatgaagaaatacctcaaggtgctgcccatg
tacgcaggtctgccctacgctgaccagatgaaggtgtttgagaggacgccccctactgtc
cgcaaggtggtggtggccactaacatagcagagacgtccatcaccatcaacggcatcgtg
tttgtgatcgactgtgcatttgtcaagctgcgggcgtacaacccttgcactgcaatcgag
tcactggtggtcacacccatctccaaggcctcggccagtcagagggcaggacgaggggga
cgcaaccgagccgggaagtgcttcagactatacacagaggaggattttgagaagctgcct
gcgtccacggttccagagatgcagcgtaccaaccttgcccctgtcatcctgcagctcaaa
gctctgggcatagacaacgtgctgcgattcagcttcctctctcctcctccagcccagtcc
atggtccaagccctggagttgctctatgccctggggggtctggaccagtatggtcgtctg
accgaccctatgggagtacgtatggcagagttccccctcagccccatgttcgccaagatg
ctgctggagtcaggaaactttggctgttccaaggagatcgttaccatagcagccatgatg
cagatccaaaacatcttcatggtgccagccaatcagaagaaaccagcagcgcgggagcat
cggaagtttgctgtggcggagggagatcatctcaccatgctcaatgtgtacgaagccttc
atcaagcaccagaagagctctcagtggtgtcaggaacacttcctcaactacaagggtctg
ctgcgagccatgactgtacgagaacagctcagacgactcatgaacaagttcaaggtgcca
cgcacctccagcgaaggtgacccggatgtgatcctgagatgcatcgtgtctggttttttc
gccaatgctgcccgcatgcaccactcaggatcctacaggactctacgggatgacagagag
cttcacatccatcccaactctgtgctgtttggagagaagcctacgaagtgggttgtcttc
aatgaagtcgtgcagacctctaagtactacatgcgtgatgtcacagctgtagagtcctcc
tggttggtcgagcttgcaccccacttttacaaggaggcaagcacgggtcattga
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