Coregonus clupeaformis (lake whitefish): 121546194
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Entry
121546194 CDS
T08357
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121546194
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121546194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
LptC
Motif
Other DBs
NCBI-GeneID:
121546194
NCBI-ProteinID:
XP_041713204
LinkDB
All DBs
Position
Unknown
AA seq
2845 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLANVNIDVIHRIDRTGSYDEEVDTYFSEGLTKWRDL
NLTEHFTTFLREVSNKSQSFNLLVFHQRSIVESLKTHLSTKNSLACQPLLDLVVQLARDL
QMDFYPHFPDFFVLITSLLETQDTEILEWAFTCLSYLYKYLWRLMVKDMTKMYSLYSTLL
AHKKEHIRKFAAESFSFLMRKVPDLDALLNHMFLDLEEHPGKAEGVGQLLFEMCKGVRNM
FHSCAGTALPVALRKLGPSADQEVSLPWDAVRDSLDQMAQAAANHVEKEHFLVLWESLQT
CVSEVLRNLNKTDVDEEEEGQASEHLERLLFILHTLVGHRNGDKITKPDTVCQTVHELLQ
TPALPGPCCRLVLQIISSLLLGENVSLPNIVTQDTVKMVFSSGMDQDLILEFTKEMFTMK
RFEQFFLPCLLQYLEGLFSSVDSVSRHSALEVLVSLILAKAPPPTDGSMAFETYPLVFTG
KTPGKEPGDGTEKVSVPELILSLISLPQDQNQTITDLSLPWAALVLLPHLRPLAAGSVVP
SLTALINRLLLNVESKVLGKGGLFVARQALSSLLSLNGSAEVLSLVPVERVKTIIQKFPT
DMSALLLGDLYYTRLSVNGCSEHLSHSALLDLHQMLHVNLSSSSSKIRLLTLRILTHFEA
ELKPSEGEESVEIQPVFAVCFQAELVPASVQDYREKLLHLRKLRHDLVQRSLPQGQQGTF
QQVPLRYLISMLFINFKPLWDPVIELIVTHARGMENKDFWKVYHEHLELVAGLAEKELRE
GDDDADNECEDGGSELQGEPGCDVIESGEVGVLFLQRLKMTSDPSERTDFTNFRGLLWRA
MALVPDRVEPRSRELSPLMLRFIRNEFYPADLLVAPTQDLRKRSSPAAMEASMAGEEEED
REEEEEARPERKMPPKRAAAKQLIAHLKVFAKFTNPRSLYLENSLNELYTQLLCHQDQQI
QRAALECVLTYKDPNVLPYKENLERLLDDKYFKDEIVHFNVSEEEAVVDASHRAQLIPLL
MRVLFGRMRSKTGSKFQGKSGAVQRSSIVLRFLAGCQSEELGMFIDLLLEPVCHHGQGLC
LAAVDKAIAETDSSAVLPLGRQHSLLNIVNTVISKLGHLIHTHLPKVLQILLCVTASVST
ILNQREQLKAGCIAPLKNLRRLGVLRIQDFFDGFDSYSFTPDELDAVFQAIVWPQVCRLP
TESPYSPTPLLKLIHVWSKNARYFPLLAKQQSGHPECDVLLNVFALLSAKNVSTQTVAMV
MDIAESLVTTKDLLVEEGEEAELSVNGSVFPQPPEGAYISAEHLTQGARLLLPHISTLLQ
YLSGIVRNSDRLKKKKFRSQVAKELNILSKISRFVSDKDQSSVLISLLLPYLQKARNPQE
TEIDILATVQNLLRQCSDPSSFLKPISRLFSILHNKLPRQALTSLFQTLADLDSGLKYIT
DTAAKLNAFDSRHLDEVYFDVRLTAFQEATRRINDMDTLDMNFIYTIMHNCFASFEIGDM
SLADNATLCLSAVLTRLAAVGRGEEEYKEIVQYTILDAVRKGLRSKTESVQHDYTTVLAC
LVKTFPTRRDFRDLVQLTDYNDPESDFFEHMKHIQIHRRGRALRKFAKQLTEGTVVMSSR
SLQNFIMPYAMTALFDEKMLKNEGMTSASVEVVGAVCRRLTWSKYLYYLKHFVHILHTGQ
AEQKLAVSLLVTVLEAFHFDHDTLEREMEAAKIRAKEVVSTVVDEEGDAEEEVAAVESEE
SDTEEAMETESINSDTKTTTIETAKVVTMETDAAETVEGVAMETNATESTAEPKTVPVKK
PTPSATAPAAPSGLPQNKAELEALITSIHATVQNAVLPRLHKCLTAKVKRDEECKAVKSK
DVKEEEVARVPIAFAMVKLMQTLPTTVMDVNLPGILMKMCVLLRNRFQEIRDVARNTLIK
IIETLGVKYLQYLLKEMKSILVKGYQVHVLTFTVYQLLSHLAPILKPGDLDHCMGLLIDI
FNNELFGAVAEEKEVKGIVSKLMEARHSKSMDSYEFLGQYSGKDRVIQLILPMKDILENT
ANLKTARRAHAVLKRIVSGLLVNQAMDHQAVLLLSHGLVSESLPLVTKRNKDKKPQAPPD
PRLPPPSCLLLPPTPKRGGLKAPVSSRTNMHILVDTGLRLLHMSLKKSKVNSSEASALEM
LDPFFALLLDCLNSMHVKVITEALLAFTFLLRFPLPAVEQSAGQLTKQLFVLLKDYSKAG
AARGENFQLVQNCFKSITILVKNMKTHKITETQLQVLLGYAEEDIYDQSRQATAFGLLKA
ILSRKLVVPEMEELMKKVAKLSVTGQNGMIRVQCRHIYQKYILDYPLGKKLRSHLDFIVA
QLSYEFDTGREAALEMMAYIFQTFPQNLLLQHSGLFFVPMALAMVNDDSARCKKMAAVAI
KSLLSQLDQEHQNTLFTLVNTWLSADKVSLRRLGAQVCGLFVEVEGVQFGRRLDALLPLI
EKEIHPDNFEDIEEEQDEKAADRLLFSYLTLVTKLTKDCSLLELSKPQDTLINILGHVET
HLRYPHCWVWLTASQLFGQLFAAHRPDQLVARWREETTEKGSANNTTPEPVATTFLTTNL
DKKMRELVLSFCHQLQSKYLDTSTGEQVIKNLLFVAKVIYLISPESEITPAQEVEEEEEM
KENGGEGENDEGEKDGEDEEGDEEEKQEEEDEKDDRPPSLLWMMKKLSLMAKREAADTPK
IPLKRTCVFKFLGAIAVDLGKDRLGPYLTTIIAPLYRELDSTYADQDPTLKNLSQELIEL
LKKQVGLQIFSLAFSAVQKDASQRRANRKKHKAMQAVANPDIAARKKLKKHKNKIEAKKR
KIEFLRPGYKAKRQRNSLKDLAMVK
NT seq
8538 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaaatccaagtcgtcgtatcataaatctgagaacactttcaggtttctcacg
tttgctgaaaggcttgccaatgtcaatatcgatgtcatccatcgcattgacagaactggg
agttatgatgaggaggtagacacctacttttcagaaggactgacaaaatggagggacctg
aatttgacagagcatttcaccaccttcctgagggaggtgtccaacaagagccagtccttc
aaccttctggtgttccatcagaggtctatagtggagagcctgaagactcacctcagtacc
aagaacagcctggcctgccagccgctactggacctggtggtccagctggctagggacctc
cagatggatttctacccccacttccctgacttcttcgtcctcatcacctctctcctggag
acccaggacacagagatactggagtgggccttcacctgcctctcctacctctacaagtac
ctctggagactcatggtcaaggacatgaccaaaatgtacagcttgtacagcacactgttg
gcgcacaagaaggaacacatacgaaagtttgcggcagagagtttttcttttctgatgaga
aaggtgccagaccttgacgcccttctcaaccacatgttcctagacctggaggagcaccct
gggaaggcagagggggtgggacagctgctgtttgagatgtgtaaaggagtccgcaacatg
ttccactcctgcgctggcacggccctcccagtagctctgaggaagctaggaccaagcgct
gaccaggaagtctctctaccctgggatgctgtcagagactcactggatcaaatggcccag
gcagcagccaatcacgtagagaaagagcacttcctggttctgtgggagtctctacagacg
tgtgtgagtgaggtcctacggaacctgaataagacagatgttgatgaggaggaggagggt
caggcctccgagcacttggagcgtctgctcttcatcctccacaccctggtgggacaccgc
aacggagacaagatcaccaagccagacactgtctgtcagacagttcatgagttgctccag
accccagccctcccaggaccctgctgtagactagtgctccagatcatctcctctctactg
ctgggggagaatgtctcactaccaaacatagtcacacaggacacggtcaaaatggtgttc
agcagtgggatggaccaggacctgatactggagttcactaaggagatgttcaccatgaaa
cggtttgaacagttcttcctgccctgcctgctacagtacctagaggggttgttctccagt
gtagactctgtgtctcgtcactctgccctggaggtgctggtcagtctcatcctggccaaa
gccccgccccctacagacggctccatggccttcgagacctaccccctggtcttcaccgga
aagacccccggtaaggagccaggtgatgggacagagaaggtgtcagtaccagagttgatc
ctctctctgatcagcctaccccaggaccagaaccagaccatcactgacctgtccctgccc
tgggcagccctggtcctcctgccccatctcagaccgctggcagcagggagtgtcgttccc
agtctgacagccctcatcaatcgcctgctgctgaatgtggagagtaaagtgctcgggaaa
ggcggtctgtttgtggccaggcaggccctcagctctctgctcagtctgaatggatctgct
gaggtgctctccctggtgccagtggagcgggtcaagaccatcatccagaagttccctaca
gacatgtcggctctgttgctaggagacctctactacacccggctgtcagtcaacggctgc
tccgagcacctttcccacagtgcactgctcgacctgcaccagatgctgcacgtcaacctc
tcctccagcagctccaaaatccgcttgctgactctgaggattctgacccactttgaggca
gagctcaaaccgtcagagggtgaggagagtgtggagatccagcctgtgtttgcagtgtgt
tttcaggctgagttggtccctgcctcagtgcaggactacagagagaagctgctgcacctc
aggaagctcagacacgacctggtacagagatcactaccccaggggcaacaagggaccttc
caacaggtgcctctacgctatcttatttccatgctgttcatcaacttcaaacccctgtgg
gatccagtcattgaactcatagtgacccatgccagaggaatggaaaacaaagacttctgg
aaggtctaccatgagcatctggagttggtggcaggtcttgctgaaaaggagctgcgtgaa
ggtgacgatgatgccgataatgaatgcgaagatggaggctcggagctgcaaggggagccg
ggctgtgatgtcatcgagagcggggaagtgggggtgctcttcctgcagcgtctgaagatg
acctctgaccccagcgagaggacagacttcactaacttcaggggcctgctgtggagggcc
atggctctggtccctgaccgtgtagaaccacgcagtagggagctcagtccactgatgcta
cgattcatcaggaatgagttttacccagctgacctactggtggctcctactcaggacctg
aggaagaggagcagtcctgctgccatggaggctagcatggcgggagaggaagaggaggac
agggaggaagaggaggaggctagaccagagaggaagatgccaccaaaaagagcagcagcc
aagcaactcatcgctcacctgaaggtttttgccaagttcaccaaccctcgctctctgtac
ctggagaatagcctcaatgagctgtatactcagttgctgtgtcaccaggaccagcagatc
cagagggcagcgttggagtgtgttctgacctacaaagaccccaacgtcctcccctacaag
gagaatctggagaggctgctggatgacaaatacttcaaggatgagatcgttcacttcaac
gtctcagaggaggaggccgtggtggacgcctcacacagggcccagcttatcccactgctt
atgagggttctgtttggccggatgcgcagtaagaccggcagtaagttccagggcaagtct
ggcgctgtgcagcgttcctccatcgtgctgaggttcctggcaggatgccagtctgaggag
ctgggcatgttcattgacctcctgctggagcccgtctgccaccacggacaaggtctgtgt
ttagctgcagtagacaaggcgatagccgagacagactcctctgccgtccttcctctgggg
cggcagcacagcctgctgaacatagtcaacacagtcatcagtaaactgggccacctcatc
cacacacacctgcccaaggtgctgcagatcctactgtgtgtcaccgcctccgtctccacc
atcctcaaccagagagaacagttaaaggcaggctgtatcgctcctctgaagaacctgagg
cgcctgggggtcctgaggatccaggacttctttgatggcttcgactcgtacagcttcacc
ccagacgagctagacgctgtcttccaggctatcgtctggccccaggtctgccgtctgccc
acagagagcccctactcccccacccccctcctcaaactcatccacgtctggagcaagaac
gccaggtacttccccctcctggccaagcagcagtctggtcacccggagtgtgacgtcctc
ctcaacgtgttcgccctgctctccgccaagaacgtctctacccagactgttgccatggtg
atggacatcgccgagtccttggtgaccacgaaggaccttctggttgaggagggtgaggag
gcggagctgagcgtcaacggcagtgtgttcccccagccaccagagggagcttacatttct
gcagagcatctgacccagggtgccaggctgctcctgccccacatctccaccctgctacag
tacctcagtggcatcgtacgcaactctgacagactcaagaagaagaagtttagatcccag
gtggccaaggagctcaacatcctctcaaagatcagcaggtttgtgagtgataaggaccag
agctccgtgctcatcagtctgctgctgccatacctccagaaggcccgcaacccacaggag
acagagattgacatcctggctacagtccagaacctgctgagacagtgttctgatccctcc
tccttcctcaagcctatcagtagactgttctccatcctccataacaagctgccaagacag
gccctcacctccctcttccagactctggcagacctggatagtggactgaagtacatcaca
gatacagctgctaagttgaatgcatttgacagtcgtcacctggacgaggtctactttgac
gtgcgtctcacagccttccaggaggccaccaggaggatcaacgacatggacacgctggac
atgaacttcatctacaccatcatgcacaactgcttcgcctccttcgagattggagacatg
tccctggcagacaacgccaccttgtgtctgtctgctgtccttacacgtctggctgcagtg
ggccgtggagaggaggagtacaaagagatagtacagtacaccatactggacgctgtcagg
aaaggactgaggagcaagactgagagtgtgcagcatgactacaccacagtgctggcgtgt
ctggtgaagaccttccccacccgtagagacttcagagatctggtgcagctcaccgactac
aacgaccctgagtcggacttctttgaacacatgaagcacatccagatccatcgtagaggt
cgcgctctgaggaagttcgccaagcagctgacggagggtacggttgtgatgtcatcacgt
tccctccagaactttatcatgccctacgccatgactgccctcttcgacgagaagatgctc
aagaatgagggtatgacgtcagcctcagtagaagtggtaggagctgtgtgtaggagactg
acctggtctaaatacctctactaccttaaacactttgttcacatactgcacactggacag
gctgaacagaaactggctgtcagtctattggtgactgttctggaggcgttccactttgac
catgatactctggagagagaaatggaggcagctaagatcagggccaaagaggttgtgagc
accgtcgttgatgaagaaggtgatgcggaagaggaggtggcagctgtcgaatcagaggag
agtgacactgaggaagccatggaaactgaaagcatcaacagcgacacgaaaacaaccacc
atagaaacagccaaggttgttactatggaaacggacgctgctgagactgttgagggtgtt
gctatggaaacgaatgccacagaatctacagcggagcctaaaactgttccggtgaagaag
ccgaccccttccgccacagcccctgcagcccccagtggattaccccagaacaaagcagag
ctggaggctctgatcacctctatccatgccactgttcaaaatgctgtcctgcccaggcta
cacaagtgtctcaccgccaaggtgaagcgagacgaggagtgtaaggcagtaaagtctaag
gatgtgaaggaggaggaggtggccagagttcctatagccttcgccatggtcaaactgatg
cagacactacccacgaccgtcatggacgtcaacctgcctggcatcctgatgaagatgtgt
gtgctgctgaggaatcgtttccaggagatcagagacgtggctcgtaacaccctgattaag
atcattgagactctgggggtcaaatacttgcagtacctactaaaggagatgaagtccatt
ctggttaagggctaccaggtccatgtgttgacgttcacagtgtaccagctcctgtctcac
ctcgctcctatactgaaacctggagacctggaccactgcatgggcctgctaatagatatc
ttcaacaacgagctgtttggtgcagtggctgaggagaaggaggtgaaggggatagtctct
aagctgatggaggctcgccacagtaagagtatggactcctatgagttcctgggccagtac
tctggcaaggacagagtcatacaactcatactgccaatgaaagatatcctggagaacaca
gccaatctgaagacagcccgtcgtgcccatgcagtgttgaaaaggatagtgtcagggcta
ctggtgaaccaggccatggaccatcaggctgtactactgctcagccacggcctggtctca
gagagtctgcccctcgtcaccaagaggaacaaggacaaaaagccccaggcccccccggac
cctcgcctgccccctcccagctgtctcctcttgccccccactccaaagagagggggactg
aaagcccccgtcagcagccgcaccaacatgcacatcctagtggacactggactcaggctg
ctccatatgagtctgaagaagtccaaggtgaactcctctgaggcctctgctcttgagatg
ctggatcccttctttgctctgctactagactgtctcaactccatgcacgtcaaggtgata
acagaggctctcttagcctttacgttcctgttgcggttccccctgccagctgtagagcag
agtgcaggccagctcactaagcagctgtttgtccttctcaaagactactccaaggctggc
gctgcccgcggagagaacttccaactcgtccagaactgcttcaagtccatcaccatccta
gtaaagaacatgaagacacacaagataactgagacgcagctgcaagtgctgctgggttac
gctgaggaggacatttatgaccaatcacgtcaggcgacagccttcgggctgttaaaggca
atcctgtccaggaagctggtagtaccagagatggaggagctgatgaagaaagttgccaag
ctgtctgttaccgggcagaacggcatgatcagggtccagtgcagacatatttaccagaag
tatatcctggattatcctctggggaagaaactgagatcacatctggactttatcgtggcc
cagctcagctatgagtttgacacaggaagagaggctgctctggagatgatggcctatata
ttccagaccttccctcagaacctgctgctgcagcacagtgggttgttctttgtccctatg
gctctggccatggtgaacgatgactcggctcgctgtaagaagatggctgcagtggccatc
aaatcactgctgagtcaactggaccaggaacaccagaacaccctgttcaccctggtcaac
acttggctgtctgcagacaaggtgtctctgcgtcgtctgggggcccaggtgtgtgggctg
tttgtggaggtagagggggttcagtttggccgtcgtctagatgccctgctacccctcatc
gagaaagagatccaccccgacaactttgaagacattgaggaggagcaggatgagaaagcg
gcagacagactgctgttcagctacctgaccctggtcaccaaactcaccaaggactgtagc
ctactggagctcagcaagcctcaagacacactcatcaacatcctgggtcatgttgagacc
cacctgcgctaccctcactgttgggtgtggctgaccgcctctcaactgtttggtcagctg
tttgctgcccaccggccagaccagctggttgcccgctggagagaggagaccacagagaag
ggcagtgccaacaacaccacaccagaaccagtggcgaccacattccttaccaccaacctg
gacaagaagatgagagagttggtcctgtctttctgtcaccagctccagtcaaagtacctg
gacacgtcaacaggagaacaggtgatcaagaacctgctgttcgtcgccaaggtgatctac
ctgatctcacctgagtctgaaatcacacctgcccaggaagtagaggaagaggaggagatg
aaggagaatggaggagagggggagaacgatgaaggagagaaagatggagaggatgaggaa
ggggatgaagaagagaaacaggaagaggaggatgagaaggatgatcgtcctccatcctta
ctgtggatgatgaagaagctgtctctaatggctaagagagaagctgcagacacgcccaag
atacccctcaagagaacatgtgtgtttaagttcctgggggccatagctgtggaccttggt
aaagacaggctgggtccttacctcaccaccatcatcgcccctctctacagagaactggac
agcacctatgcagaccaagatcccaccctgaaaaacctgtcccaggagctgatagagctg
ttgaagaagcaggtggggctgcagatcttctccctggccttctcagccgtccagaaggat
gcctcacagaggagggccaaccgcaagaaacacaaggctatgcaggcggtggctaaccct
gacatcgcagccaggaagaagctgaagaaacacaagaataagatcgaggccaagaagagg
aagattgagttcctgaggcctggctacaaagccaagagacagaggaactcactcaaggac
ttggctatggtgaaatga
DBGET
integrated database retrieval system
