Coregonus clupeaformis (lake whitefish): 121546268
Help
Entry
121546268 CDS
T08357
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121546268
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121546268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
121546268
NCBI-ProteinID:
XP_041713371
LinkDB
All DBs
Position
Unknown
AA seq
1780 aa
AA seq
DB search
MLILHIASLLTLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHQLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREMYDERMNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGKKWQVYRYYSYDCESAFPGISVGPL
VKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFTKLHT
LGDNLLDSRDEVTEKYYYSLFDMVVRGNCFCYGHASKCAPVDGIHVSTEGMVHGHCMCNH
NTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNYHSRSCHFDMAVYLSTGNVSGGVC
NECQHNTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPAGSLQGGVCDGRTDVSAGLI
AGQCRCKASVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LVTGRNCDQCLPQHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCRGHMYGRRCDQV
ESGFYFIALDHYTYEAEDAKHGPGVTVVPRPYPLDRSPTWTGAGFVNVPEGAHLEFHINN
IPDSMDYDMLIRYEPQFPEQWEQVEIRVIRPYSKRVGQPVSPCENTLPGGDQQSVSLPPG
SRHVVLPRPVCLEKGLNYTVRLSLRLYSSLSDVQSPYTLIDSLVLIPRVRELELFEGSQG
EGAWDTFQRYRCLESSQSVIKSPMTDICKDYIFSVSALLHQGAMACQCDSQGSLSAVCDP
SGGQCQCRPNVASRNCDRCAPATFLFSPSGCRPCECSPMGSVNAFCHEATGQCECVPGAS
GRQCAHCLPGYWGFPQCQACQCNGNSDYCHPQTGECQGCRAFTTGHMCERCLDGYHGDPV
LGLGGHCRPCMCPDGPGSGRQYADGCYQSANNYQLVCICSPGYRGARCDECAPGHYGNPQ
VPSGHCLPCQCNDNIDQLDPGSCDARTGVCLKCLHNTEGYGCQRCMLGYYGNAATQSCSR
CMCYSVGTTSEACPSPGECHCDLQTGQCPCRPNVIGQNCDRCAPDTFNIGSGKGCQTCDC
DPTHSFGTSCNELSGQCSCRPGFGGRKCNECRDMFWGDPEVKCQACNCDLRGIAREHCHR
SSGQCVCVEGVSGPRCNQCARGYHGEFPACERCHRCFAEWDRVVGELTNQTQRLKDHVTE
LQTNGVTAPYKDTVSSLEISANAISAIVENNPAIQRMEDVQRMMQQATELVADLNERLNV
SEDSLSRLVVNANDTEASIDTLREQARELERTVKDMRDHIKTVKNSNIEGAMDTITEAHL
ESKKAEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLATELE
TLDLSELSKQTCGAAGGKEGCAASPCGGVGCVSVDGTHRCGGEGCEGLVTQTQSALKTAK
DFDQEILSAMQEVDKLSRMVSEVKVRADKAKLSAQEVLLKSNQSRDRVEHSNEQLRSLIK
EIRDLLTNDRANVEVIEAVSNEVLALEMPTSPGQLEALTQEIRDRVGTLTSVEDILSQSA
NDIHTAERLLEQARTASQEASEMETAALVKEALETTEHAQNAAIDTVKQAHNNTRGTLDL
ITSVESETAESELRLSNATLRLLQLERDVTVLRESSQGTSNRTQHTERLSETARQDAEQA
QQEFDSEVKVKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLIQTSEKLQRLSELERS
YAANQRTLEAKAGQLAGLEKTARQLLNDISQKVTVYSTCS
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattacacatcgcatcacttttgacccttgggtggcgctcctttgcacagctg
ccggagtttggggatgtgtgcactgaggggagctgctaccccgccaccggggaccttctg
atcggccgcgcgcaccagctcaccgcctcttccacttgcggcattgagaagcctgagcgc
ttttgcatcgttggtcacctggaggaggagaagaagtgttttgtgtgtgactccagggag
atgtatgatgagaggatgaaccacaccaccagccacagcatcgaaaacttggtcaccacc
ttcgcccccaaccgcctcaagacctggtggcagtctgagaatggtgtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcatgacctttaagacg
ttccgtccggccaccatggtgatcgagcgttccatggattttggaaagaagtggcaagtg
taccgttactatagctacgactgtgagtccgccttccctgggatatccgtgggaccattg
gtcaaagtggacgacgtcatctgtgactcccgctactctgacatagagccatccacagag
ggagaggtgatattcagggtgctggacccagcgtttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagtttactaagctccacaca
ctgggtgacaacctgctggactccagagacgaggtcacagagaaatactactactccctc
tttgacatggtcgtccgcggcaactgcttctgctacggacatgcttctaaatgtgcccct
gtagatgggatacatgtaagcacagagggcatggtccatggtcactgtatgtgtaaccac
aacacagaaggtctgaactgtgagcactgtaaggacttctacaatgacctgccctggagg
cctgcagagggacgcaacaccaatgcctgcaagatgtgcgagtgtaactaccactccagg
tcatgtcactttgacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgt
aatgagtgtcaacacaacaccatggggcgtcagtgtgagcagtgcagacccttctactac
cagcaccccgaaagacacttgagagaccccaacatctgtgaaccgtgtagctgtgacccg
gcgggctccctgcagggtggggtgtgtgacggcaggacagacgtgtctgctggtctgata
gcaggacagtgtcgctgtaaggccagtgtggagggagagcgctgcgaccactgtagacag
ggacactacggcctgggacagggaccaaacggctgcctgcagtgtacctgtaaccccctg
ggtacgctgcctgggggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
cttgtcaccggcaggaactgtgaccagtgtctgccgcaacactgggggctgagtaatgac
atggacggctgcagaccatgtgactgcgaccagggcggagccgttaacaatgattgttct
ccaatatcaggccagtgtcagtgtagaggacacatgtatgggaggcgttgtgaccaggtg
gagtcaggattctacttcatcgccctggaccactacacctatgaggctgaggacgccaag
cacggccctggtgtgacagtggttcccaggccctatcctctggaccgtagtcctacctgg
acaggggcagggtttgtcaatgtacctgagggagcccacctggagttccacatcaacaac
atacctgactccatggactacgacatgctgatccgctatgaaccacagttcccggagcag
tgggagcaggtggagatcagagtgatacgtccttactcaaagagagtgggacagccagtc
agtccatgtgaaaacacgctaccaggaggagatcagcagtcggtgtctcttcctccagga
tccagacatgtggtgctcccgaggcctgtgtgtctggagaaggggctgaactacacagtg
cgtctcagtctgcgtctctactcctctctcagtgacgtccaaagcccctacacactcatc
gactccttggtgctgattccgcgggtgcgtgagctagagttgtttgagggttctcagggt
gagggggcatgggatacgttccagaggtaccgctgtctggagagcagccagagcgtcatc
aagagccccatgacagacatctgtaaagactacatcttcagcgtgtctgccctgctacac
cagggggctatggcgtgccagtgtgattcccagggctctctcagtgcggtgtgcgacccc
agtggcgggcagtgccagtgtcggcccaatgtggcgagcaggaactgtgaccgctgtgcc
cccgccaccttcctgttcagcccctcaggatgcaggccctgtgagtgtagtcctatgggc
tctgtgaacgctttctgccacgaggccacaggtcagtgtgagtgtgtaccaggggcgtcg
gggcgtcagtgtgcccactgcctgccaggctactggggcttccctcaatgccaggcctgc
cagtgcaacggcaacagcgactactgccaccctcagactggggagtgccagggctgccga
gccttcaccaccgggcacatgtgtgaaaggtgtctggatggttaccatggcgacccagtg
ttgggtttggggggtcactgccgcccctgcatgtgtcccgacgggccggggagcggacgc
cagtacgcagacggctgctaccagtccgctaacaactaccagctggtctgtatctgcagc
cccggatacagaggagccaggtgtgacgagtgtgccccaggtcactatggtaacccccag
gtgcccagcgggcactgtctgccctgccagtgtaacgacaacatcgaccagctggacccg
gggtcctgcgacgctcgcacgggcgtctgcctcaaatgcctgcacaataccgagggctat
ggctgccagcgctgcatgctgggttactacggcaacgccgccacccagagctgcagtagg
tgtatgtgttattcagtgggcacgacgtcggaggcgtgtccatccccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaacgtgattggccagaattgcgac
cgctgtgcccctgatacgttcaacataggaagcggaaagggctgccagacctgtgactgt
gacccaacccactcctttgggacatcgtgcaacgagctgtcggggcagtgctcatgcagg
ccaggtttcgggggaagaaaatgcaacgagtgccgagatatgttctggggagatcctgag
gtcaaatgtcaagcgtgtaactgtgacctgcgtggcatcgccagggagcattgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtgtctgggcccaggtgtaaccagtgtgcc
agggggtaccatggggagttccctgcctgcgaacgatgccaccggtgcttcgccgagtgg
gaccgcgtggtaggggaactgaccaatcagacgcagcgtttgaaagatcatgtgacagag
ctccagaccaatggggtgacggcgccatacaaagacaccgttagcagtctggagattagt
gctaatgctatcagtgcgatagtagagaacaaccctgctatacagaggatggaagatgta
caacggatgatgcagcaggccactgagctggtggcagacctgaacgagaggctgaacgtc
tcagaggattccctgtcacgtctcgttgtcaatgccaacgacactgaggccagtatagac
acactgagagagcaagcccgagagctggagagaacagtcaaagacatgagagaccacata
aagactgtgaagaactctaacatagagggagcgatggacaccatcaccgaggcacacttg
gagtctaagaaggcggagatccgtgccaatcagaccaccagttaccccgacaacactttg
gaacagtcggctacactacggcgcgaagcggaggccagactgagccagaaccaggccgag
tttgacctgagacaacagaaacacacagagagactggagcggctcgccacagagctcgaa
actcttgacctatcagagctcagcaagcagacatgtggagcggctggagggaaggagggg
tgtgctgcgtccccctgtggaggggtggggtgtgtgtctgttgatggcacccatcgctgt
ggtggagaggggtgtgagggtctggtcacacagacacaaagcgctctgaaaacagccaag
gacttcgaccaggaaatcctgtccgccatgcaggaagtggacaagctctctaggatggtg
tcggaggtgaaggtgcgtgcggacaaggccaagctgagtgctcaggaggtgctgctgaag
tccaaccagagccgagatagagtggagcacagcaacgagcagctccgcagcctcatcaag
gagatacgagacctactcactaacgaccgtgccaacgtggaggttatcgaagcagtgtcg
aacgaggtgttggccctggaaatgcccacgtcgcccgggcagctggaggccctgacccag
gagatcagagacagggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgcc
aacgacatacacactgcagagaggctgctggagcaggcccgcaccgccagtcaggaggcg
tctgagatggagacagctgccctggtgaaggaggctctggaaacaactgagcacgctcag
aatgctgccatcgacaccgtcaaacaggcccacaacaacaccaggggaacacttgacctc
atcacctctgtggagtcggagacggcggagtcggagctgcgtctgagtaacgccacactg
cgtctgctgcagctggaaagagacgtaactgtgctgagagagagcagccagggcaccagc
aaccgcacacagcacactgagagactgtctgagaccgccaggcaggacgcagagcaggcc
cagcaggagtttgactcggaggtgaaggttaagtacagtgttgtggagggcttggtggtg
acgaaggcagagggcgtgtccgacgccaggaagagggcggagctactgcagcaggaggcc
aaggagctgctcatccagaccagcgaaaaactacagagactcagtgagttggagaggtcg
tatgcggccaaccagcgtactctggaggccaaggcaggtcagctggccgggctggagaaa
acggcacgccagctgctcaatgacatcagccagaaagtcacggtctacagcacctgttct
tag
DBGET
integrated database retrieval system