Coregonus clupeaformis (lake whitefish): 121546292
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Entry
121546292 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121546292
03015 mRNA surveillance pathway
121546292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121546292
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121546292
mRNA cycle factors
P-body specific factors
121546292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
121546292
NCBI-ProteinID:
XP_045068363
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MPAEGKRSLNMEEKEVSSFSNKEKDRDGDRRPASSRDKVKDEAKMSGKKDIGKATEEKRR
RLEEDKRKKEEKERKRKEEAKQKAEEEQRKKEEEEKKQQEEQERKVQEEEAKRQREEEAA
ELKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQHPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPDLPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEASTGSHLKLIVDAFI
QQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPC
MSDVADDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKLFSKTDTLHCLKMLL
SDFSHHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAY
YYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKGYLICC
MVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA
KFLGELYNYRMVESAVIFRTLFSFISFGVNPDGSPSPLDPPEHLFRIRLVCTLLDTCGQY
FDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISDTLELLRPKMRLCIS
LEDSTRQVTELEREFLVKLGLAMDGQKDGRPSSAMGSEGEALDEDDDDEDEEGGADTEEQ
SGNESEMNEPEEEKLAHNHTPYLRTCCVFQEGSENEEEEREEEEEENTDYLTDSNKENET
DEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKS
QLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQ
EERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFK
TGGRKQETKQERNERHEKRDRQERQERKDRYEGQEARASQLSRTRY
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggaggagaaagaggtgagctcctttagt
aacaaggagaaagacagggatggtgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggccacagaggaaaagaggagg
agacttgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaggaggcg
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaaaaagcagcaggag
gagcaggagaggaaagttcaggaggaagaggccaagagacagcgcgaagaggaggcagct
gaactcaaggagaaggaggagggccaccagctccatcaggaggcctgggagcgccaccag
tgccggaaggagctgcgcgtccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacggccttcgtcaagaagctgcgc
acactcaccgagcagcagcgcgaagccctctccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcagtgggctcggtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctacgccgaattcgccccactg
ctcctccaggcctggaagaggcactttgaggcgcgcaaggaggagaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccattgtgggcctgttcacg
gacaaggagggcctgtcgctcatctacgagcagctgaagagcataatcgggacggaccgc
gagacacacacccatgtatcggtggtcatcagcttctgtaaacactgcggggatgacatc
gcaggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacggagaagcagcatcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaaaaaggaccaccgcgagctacagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagatcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggagagtatgacctggaggggggcatctgg
gaggacgaggacgccaggaacttctacgagaacatggtggacctgaaggccttcgtccct
gccatcctgttcaaagacaacgagaagggcaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagctggagctcgaggctctagacatt
gccgatgaccctctggagctggatgggcctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaaggtaaagatgaagggatcaagttagggtatgaaagaggt
cagggaaacagagctagggcccactcatgggtgctcagggccaatcaactaaacagagaa
caagaggatgaggaggcaagcaccgggtcccacctgaagctcatcgtggacgccttcatc
cagcagcttcccaactgtgtcaacagagacctcatagacaaggctgccatggatttctgc
atgaacatgaacaccaagtcaaacaggaggaagctggtccgtgctctcttcaccgttccc
agacaaaggttggatctgctgcccttttactcccgtctggtggccacccttcacccctgc
atgtcagatgtggcggatgacctgtgctccatactcaaaggagacttcaggttccatatc
cggaagaaggaccagatcaacatcgaaacgaaaaataaaactgtaaggtttattggggag
ctggccaagttcaagctgttctcaaaaacggacactctgcattgtctgaagatgctgctg
tcagacttctcccatcaccacatagagatggcctgcacccttctggagaccagtggacgc
ttcctcttcagatcccccgactcccacctgcggaccagcgtcctcctggagcaaatgatg
cgtaagaaacaggcgcagcacctggatgctcgctacgtgaccatggtagagaatgcctac
tactactgcaaccccccgcccatggagaagaccgtcaggaagaagaggcccccgctgcag
gagtacatccgcaaactgctctacaaggacctctccaaggtcaccacggagaaggtgttg
aggcagatgcgtaaactcccctggcaggacccagagtctaaaggctacctgatctgttgc
atggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctggct
ggccttgtggcctaccaggaggacgtgggcatccacgttgtggacggggtcctggaggac
atccgcctgggaatggaggtgaaccagcccaagttcaaccagcgtcggatcagcagtgcc
aagttcctgggggagctctacaactaccgcatggtggagtcggctgtcatcttccgcacc
ctcttctccttcatctcgttcggggtgaacccggacggcagccccagccccctggacccc
cccgagcacctgttccgcatccgcttggtctgcaccctgctggacacctgcggccagtac
tttgaccgcggctccagcaagaggaagctggactgcttcctcatctacttccagaggtat
atctggtggaagaagagtgtggaggtgtggagtgcggagcaccagttccccatcgacatt
gactacatgatcagtgacaccctggagctgctccggcccaagatgaggctctgcatctcc
ctggaagactccacacgacaggtcaccgagctggagagggagttcctcgttaaactgggt
ctggccatggatggacagaaggacggccggccctccagtgccatggggagtgaaggggag
gctctagacgaggatgacgatgacgaggatgaagagggaggggcggacacagaggaacag
tctggcaatgagagcgagatgaacgagccagaggaagaaaagctagcacacaatcacacc
ccctatctaagaacctgctgtgtgttccaggaagggtctgagaatgaggaagaggagcgg
gaggaagaggaggaggagaacactgactatctgaccgactccaacaaggagaacgagacg
gacgaggagaacaatgaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgct
gaggatgaggacttcatccaggctctggacaagatgatgctggagaacctgcagcagcgg
agcggggaggcggtgaaggtgcaccagttggacgtggccatccccctgcagctgaagagc
cagctgaagaaaggccctggaggacccgtctgctctggagagggagacgcagacatctca
gacaccatgcagtttgtcatgctcacacgcaagggcaacaagcagcagtttaagatcctg
aacgtgcctctgtcttcccacctggctgccaaccacttcaaccagcagcaggcagagcag
gaggagaggatgaggatgaagaagctcactctggacatcaacgagagacaggagcaagag
gactaccaagaaatgatggcgtctctggcccagcggcccgctcctgccaacaccaaccgg
gagcggcgcccgcgctaccaacaccccaaaggggcacccaacgccgacctcatcttcaag
accggaggaagaaagcaggaaacaaagcaggagagaaatgaaaggcacgaaaagcgtgac
agacaagagaggcaagagagaaaggacagatatgagggccaggaggctagggccagccag
ctcagccggacacgatactga
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