KEGG   Coregonus clupeaformis (lake whitefish): 121546371
Entry
121546371         CDS       T08357                                 
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121546371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121546371
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     121546371
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm RRP4_S1 DUF7645 Enterotoxin_b
Other DBs
NCBI-GeneID: 121546371
NCBI-ProteinID: XP_041713526
LinkDB
Position
3:22277433..22281599
AA seq 241 aa
MLSCFKDKVGDVLLPGDVFSFQMPESITDSKPEKVVCGPGLRRNGDEVLVCKSGILRHKQ
PNLYWIDSQQRRYVPGKGESVIGIITAKSGDIFKVDVGGSEQASLSYLAFEGATKRNRPN
VQVGDLVYSQFIIANKDMEPELVCIDSCGRANGMGVFGAGGLLFKVSLGLVRRLLAPQSE
IAKDLEKMFPFEIVVGMNGRVWVKAKTIQQTLIVANLLESCENMTAQQRQTLFRRVADGS
I
NT seq 726 nt   +upstreamnt  +downstreamnt
atgctgagttgtttcaaagataaagttggtgatgttttattaccaggagatgtattttct
tttcaaatgcctgaaagtatcactgacagcaaacccgagaaagtcgtttgtggaccaggg
cttcggcgaaacggagatgaagttctcgtttgcaaaagcggaatcctccgacataaacaa
ccgaatctgtactggatagactctcagcaaaggcggtatgttccagggaagggagagagt
gtgattggcatcataactgccaagtcaggtgacatcttcaaggtggatgtaggggggagt
gagcaggcatcactctcctacctggcctttgagggggctaccaagaggaatagacctaat
gtgcaggtgggggacctggtgtactcccagttcatcattgccaacaaagacatggagccg
gagctggtgtgtatagacagctgtggacgagccaacgggatgggggtgtttggagcaggg
gggcttctcttcaaggtgtccctgggacttgtacgcaggctgctagcgccccagagtgaa
atagccaaggacctggagaaaatgttcccctttgaaattgtggtggggatgaatgggcgg
gtgtgggtcaaggccaagaccatccagcagaccctcatcgtggccaacttgctggagagc
tgtgagaacatgacggcccagcagcggcagacgctcttcagaagggtggccgatggatcc
atctag

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