Coregonus clupeaformis (lake whitefish): 121546404
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Entry
121546404 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121546404
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_1
LRR_14
Ig_3
LRR_9
ig
V-set
Ig_2
Ig_6
LRRNT
Syndecan
Motif
Other DBs
NCBI-GeneID:
121546404
NCBI-ProteinID:
XP_045066641
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Position
35:complement(42940205..42942937)
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AA seq
621 aa
AA seq
DB search
MLITMISSLQCQTMRDPRLRGVLSRPLFVLLLALQILAVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFQDLSNLRYLNLGMCNLKEIPNILPLVRLEELEMSGNQISVIGPGSF
AGLANLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHRLERVHLH
HNPWNCNCDILWLSWWLKETVPANTSCCARCHTPASYRGRYIGELEHGYFQCDVPVIVEP
PADRNVTEGMAAELKCRTSSLTAVSWLTPNGSLVTHGAYKVRLAVLNDGTLNFTTVTMQD
TGTYTCMVSNTAGNISASAVLNVTSVENSGVTYFTTVTVETTETVDDSQTPALPPIGWVS
SSTTRGPLVQTRTTERTYTVSVLDLDGEGDRGLEEVMKTTKIIIGCFVAITLMAAVLLVI
FYKMRKQNHQQDPDGPASSMEVITVEEELAGVAAMETHLHLPPLEHYNHYNTYRSTYHHS
HTQEPLLIQASSKDNVQETQI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcacaatgatctcctccctccagtgccagacaatgagagatcctaggctgagg
ggggttctgtcccgccccctcttcgtgctgttgttggccctccagatcctggcagtggcc
ggcctggtgcgcgcccagacctgcccctctgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccgccggagcctgcgcgacgtccccgacggcatctccaccaacacgcgt
tacctgaacctgcaggacaacctcatccaggtgatcaaggtggacagcttcaagcacctg
cggcacctggagatcctgcagctgagcaagaaccacattcgcaacatcgagatcggcgcc
ttcaacggcctggccagtctcaacaccctggagctgttcgacaaccgcctcaccaccatc
cccaacggcgccttcgagtacctctccaagctcaaggagctgtggctgaggaacaacccc
atcgagagcatcccgtcgtacgccttcaaccgggtcccatcgctgcgaagactggacctg
ggagagctcaagcggctctcctacatctccgacggagccttccaggacctcagcaaccta
cgctacctgaacctgggcatgtgcaacctcaaggagatccccaacatcctacccttggtc
agactggaggagttggagatgtcaggaaaccagatctctgtcatagggcctggctctttc
gcagggctggcaaacttgcagaagctgtggatgatgcacgctcagatccagaccattgag
aggaactccttcgacgacctccagtccctggtggagctcaacctggcccacaacaacctc
accctgctgccccacgacctcttcacccccctgcaccgcctggagagagtccatctgcac
cataacccctggaactgtaactgtgacatcctgtggcttagctggtggctgaaggagacg
gtgcctgccaacaccagctgctgtgcccgctgccacaccccagccagctacaggggtcgc
tacatcggcgagctggagcacggctacttccagtgcgacgtgcccgtcatcgtggagccg
ccggcggaccgcaacgtcacagagggcatggcggcggagctcaagtgcaggacgagctcg
ttgaccgcggtcagctggctcacccccaacgggtcgctggtgacccacggggcgtacaag
gtgcgcctggccgtcctcaacgacgggacgttgaacttcactaccgtcaccatgcaggac
acagggacttacacctgcatggtgagcaacacggcaggcaacatctccgcctcggccgtg
ctcaacgtcacctcggtggagaacagcggcgtcacctacttcaccacagtcaccgtggag
accacagagacagtagatgacagccagactcctgctcttcccccgattggctgggtatca
tcttcaaccaccagggggcctctggtccagaccaggaccacagagcggacctacaccgtc
tctgttctggacctggacggggagggggaccgcggcctggaggaggtgatgaagaccacc
aagatcatcatcggctgcttcgtggccatcacgctcatggccgccgtcttgctggtcatt
ttctacaagatgaggaagcagaaccaccagcaggaccccgacggccccgcctcctccatg
gaggtcatcacagtggaggaggagctagccggggtcgctgccatggagacacacttacac
ctgcccccattggagcattacaaccattacaacacttacaggagcacctaccaccactcc
cacacacaggaacctttactgattcaagccagctcaaaagacaatgtgcaagagacccaa
atttga
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