Coregonus clupeaformis (lake whitefish): 121546715
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Entry
121546715 CDS
T08357
Name
(RefSeq) thyrotropin-releasing hormone receptor-like
KO
K04282
thyrotropin-releasing hormone receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04020
Calcium signaling pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121546715
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121546715
04081 Hormone signaling
121546715
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
cclu04030
]
121546715
G protein-coupled receptors [BR:
cclu04030
]
Rhodopsin family
Peptide
Thyrotropin-releasing hormone (TRH)
121546715
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srx
7TM_GPCR_Srw
Motif
Other DBs
NCBI-GeneID:
121546715
NCBI-ProteinID:
XP_041713884
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Position
30:complement(19700870..19703698)
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AA seq
402 aa
AA seq
DB search
MENTTDNSQDVFNFTQSEVLTNMPQNSIEVQVITIVLALIICGVGIAGNIMVVLVVLRTK
HMMTPTNCYLVSLAIADLVVLLAAGLPNISEVVDSWIYGYAGCLCITYLQYLGINVSSCS
ITAFTIERYIAICHSIKAQFICTVSRAKRIIACVWVFTSLYCIMWFFLVDTNETVYADGV
VVSCGYRVSRNLYMPIYFLDFTLFYVFPLIVATVLYGLIARILFMSPLPTNLNDRSEGSI
HQGRSTSTVKVSGKSNKGAVTSRKQVTKMLAVVVILFSLLWMPYRTLVVVNSFMDPPYLN
TWFLLFCRMCIYTNSAINPIIYNLMSQKFRAAFKKLCKCKGQDPEKVTKYSVPVYYSVMK
DSSHETHEQTEQEDVSSFGNTGGKRVNFTDECGDTVTMFSIA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggagaatactactgacaactctcaagatgtcttcaatttcacacagagtgaagttctg
accaatatgccacagaactccattgaagtacaagttataacaattgttctcgcacttata
atatgcggagttgggatagcggggaatattatggtggtattggttgtgctgcgcaccaag
cacatgatgacccctactaactgttaccttgtcagtctggctattgcggaccttgtcgtc
ctattagcggcaggtttaccgaatatttccgaagtagtcgactcttggatatacggttac
gctgggtgcctttgtatcacatacctgcaatatctgggtatcaatgtatcatcctgctcc
atcacagccttcaccattgagcgttacattgctatctgccactccatcaaggcgcaattt
atttgcaccgtgtctcgggcaaagaggataattgcctgtgtatgggttttcacctcgctg
tactgcataatgtggttctttttagtggacacgaacgaaaccgtctacgccgatggggtg
gttgtcagctgtggctaccgtgtctcaagaaacctctacatgccaatttactttctagac
tttactttgttttacgtcttccctctcattgtggctactgtgctgtacggtctcatcgca
aggatattatttatgagccccttgccaaccaatctcaacgacagaagtgaaggttctata
caccaggggcgctccaccagcaccgtcaaggtgtcgggcaaatcgaacaagggtgcagtg
acgtcaagaaaacaggttactaagatgctagcagtggtggtgattcttttctccctgctc
tggatgccataccggacactggtggtggtcaactctttcatggacccaccctacctcaac
acgtggttcctgctcttctgccgcatgtgcatctacaccaacagtgccatcaaccctatc
atctacaacctgatgtctcagaagttccgggccgccttcaaaaagctttgcaagtgcaag
ggccaagacccagagaaagttaccaagtacagtgtgccagtgtattacagtgtcatgaag
gactcttcccatgagactcatgagcagacagagcaggaggatgtcagcagctttggtaac
actggtggtaagagggtcaacttcacagatgagtgtggggacaccgtcaccatgttcagc
attgcctga
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