KEGG   Coregonus clupeaformis (lake whitefish): 121547061
Entry
121547061         CDS       T08357                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121547061
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121547061
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121547061
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     121547061
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N Sec7-like_HUS Adaptin_N
Other DBs
NCBI-GeneID: 121547061
NCBI-ProteinID: XP_041714090
LinkDB
Position
31:complement(5970761..6003078)
AA seq 1025 aa
MAADSALLVGLVEEFVLGQQDRKAVDTATELKAGQFTILQLVEALGLHLTSSQPQTRARG
VQLLSSVLQECHGDLTEREVEVLIVFYENRLKDHYVITPHVIQGLKALTKCSVLPPGSAV
SILKSLFQDVHVQSLMLAERSCVYSILVQLMESRESELKGLGADFVFGFVQSVDGERDPR
NLLQAFHIARKILHEGYDLGKFTEELFEVTSCYFPIDFSPPPNDPHGITQEELVLALRAV
LTGTPRFAEFLLPLIIEKLDSDVQSAKVDSLQTLTACASVYEHKELAEFLPGLWASLRRE
VFQTASERVESAGLAAVGALTACLSRSILTSDSEDYLNVFLDLVLKDCLHHLCEPDLKLV
WPSAKLLQATSTASYRASHRVAAAVMPSLIEQYNSRTQCAQRRTLLDVLQGFVQPVKSSE
EDESVLLDFRQSLCSIVFSALSESNADLQITSMRLLTALGQQTGLLLESDVELVVDHLTR
LILEEEDAKVSLAVVECAGALAHLHPAAFISKMVPRLKEEIFSEPMAQGDSATPSQEHPQ
QAVRQRCVTALAAVSSRPSVVQESTPVLLQVLTSAHTGTGSFSLEEVISVCHSLQRIAEQ
AQDTEETGRVFHDIILRLLGLALQAALQGSSHHRTPMLEETVLSAMVPVISTTCARLQSQ
LAGQTASRAVSLFLDGDVSFLPENAFPSQIQLLKKQAGDSWSQSQMVCLLMGCVCSLPRS
VEVPQIDRLLLELEELSCTCNHPLSYTSAAKCYAGLVNKRPAGEALDSLIDRMLKRISTE
LDSASSSVRTQAFTLLLWAAKALLLRYHPLSTALTDKLFSLLSDSELGLLAADGFSLLMS
DSPDVLNRGSHADVRIMYRQRFFTENSAKLVQGFNSVVQEKKSGYLKALSHIVNSLPRQV
QLTELPALLPLLLEALSCPDQGVQVSTLSCLQPVLLDPPSALTTQLEVLVGRTLALTTSP
TMKVRIASLRCIHALSRFPEHEIMPFRARVLRALAAPLDDHKRMVRSEAVVARNEWFLLG
SPGGR
NT seq 3078 nt   +upstreamnt  +downstreamnt
atggctgcggatagtgccttgctagtgggcttggtagaagaattcgttttgggacaacag
gaccgcaaggctgtagacaccgcaacagaactcaaggctggacagtttactatactgcag
ttggttgaagccttgggtttgcatctgaccagctcccaaccccagaccagagcccgtggt
gtccagctcctctccagtgtcctacaggagtgccacggagaccttacagagagagaagtg
gaagtccttatagtgttttatgagaacagactgaaggaccactatgtcatcacaccacat
gtcatacaggggctgaaagcgctgaccaaatgctcagtgttgccgcctgggtctgcagtg
tccattctgaaatcactattccaggacgtccatgtgcagtccctgatgctggcggagcgg
tcatgtgtttacagcatcctcgtccagcttatggaatccagagagtcagagctgaagggc
ctgggtgcagactttgtctttgggtttgtccagtcagtggatggggagagggacccacgc
aaccttctccaggccttccatattgctaggaaaatcctccatgaaggctatgatcttggt
aaattcacagaggagctgtttgaagtgacatcatgctatttccctatagacttcagccct
ccacccaatgacccccatggcatcacccaggaggagctggtactggccctgagggccgtg
ctcactggaacaccacgctttgcagagttcctgctgccactgataattgagaaactggac
tcagatgttcagagtgccaaggtggactccctgcagaccctgactgcctgtgcttctgtg
tatgaacataaagagctagccgaattcctaccaggcctttgggcctcactgcgcagagag
gtgtttcagaccgctagtgagcgggtggagtccgctggcctagccgccgtcggtgccctg
acagcctgtctttcccgctccatcctcacctctgactctgaagactacctcaatgtcttc
ctggaccttgtcctcaaagactgtctgcatcacctgtgtgagccggacctgaagctggtg
tggcccagtgcgaagctgctgcaggccacctctaccgcttcctacagggcgagccacaga
gttgcagccgccgtcatgccgtccctcatagagcaatacaacagccgcacacagtgtgct
cagcggcgcaccctactggatgtgttacagggcttcgtccagccggtgaagtcatcagag
gaggatgagagtgtgctgttggacttcaggcagtctctgtgcagtatagtattctctgct
ctgtctgagagcaatgctgacctccagatcacatctatgcgtctgctcactgctctgggc
caacagacaggccttctgttagagtcagatgtggagctggtcgttgaccacctcaccagg
ctcatcctggaggaggaagatgctaaagtcagcctggctgtggttgagtgtgcaggggct
ctggctcacctgcaccctgcagccttcatctctaagatggttccacggctgaaggaagag
atcttctcagagcccatggcacaaggtgacagtgccacgccgtcccaggaacatccccag
caggcagtgcgtcagcgctgtgtgacggcgctggctgcggtgtcgtcccggcccagtgtg
gttcaggagagcacacctgtcctgctacaggtcctcacctccgcacatactggcactggt
tcgttctcattggaagaggtgatctctgtctgccacagtctgcagaggatagcagagcag
gcccaggacactgaagagaccggtcgcgtcttccatgacatcattctgcgtctgctcgga
ctggcattgcaggcagctttgcaggggtcctcacaccatcggaccccgatgttggaggag
actgtcctgtcagccatggtacctgtcatcagcaccacctgtgcccgactacagtcccaa
ctggctggccaaacagcctcgcgggccgtgtccctcttccttgacggtgacgtttccttc
ctgccagagaacgccttcccctcccagatccagctcctcaagaagcaggcaggtgactcc
tggagccagtcccagatggtgtgtctgctcatgggttgtgtgtgctcgctgccacggagt
gtggaggttccccagatagatagactactgttagaactagaggagctgagctgtacctgt
aaccatcccctctcctacacctcagccgccaagtgctacgctgggctggtcaacaagagg
cctgcaggagaagccctggactctctgatagacagaatgttaaagaggatctccactgag
ctagactctgcatcctcctcagtcagaacgcaggcgttcactctgctgctctgggcggca
aaggctctgcttctccgctaccaccctctgtccacagccctgactgacaagctcttctcc
ctgctcagtgactcagagctgggtttgttagcggccgatggattctctctcctgatgagc
gactcgccggacgtcctcaaccgcggtagccacgccgacgtacgcatcatgtaccgccag
cgcttcttcaccgagaactctgccaaactggtccagggcttcaactctgtagtccaagag
aagaagtctggctacttgaaggcactgtctcacatagtgaacagcctacccagacaggtc
cagctcactgagctaccagcactcctgcccctcctgctagaggccctgtcgtgtccggac
cagggggtgcaggtgtctaccctgtcctgcctgcaacctgtcctcctggaccccccttca
gccctcaccacccagctggaggtgctggtggggcgcacactggcactcaccaccagccct
accatgaaagtgcggatagcctctctgcgttgtatccatgccctctcccgctttccagaa
catgagatcatgcccttccgtgcgagggtgctgcgcgccctggctgcccccctggacgac
cacaagaggatggtgaggagtgaggcagtggtggcccggaatgaatggttcctactgggg
agtccaggaggcaggtga

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