Coregonus clupeaformis (lake whitefish): 121547074
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Entry
121547074 CDS
T08357
Name
(RefSeq) transcription factor Sox-9-A-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121547074
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121547074
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121547074
NCBI-ProteinID:
XP_041714110
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Position
31
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AA seq
491 aa
AA seq
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MNLLDPFLKMTDEQDKCLSDAPSPSMSEDSAGSPCPSGSGSDTENTRPSENGLLMGPDGP
LVEFKKDDDDKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPR
RRKSMKNGQSESEDGSEQTHISPGAIFKALQQADSPASSIGEVHSPGEHSGQSQGPPTPP
TTPKTDIQVGKVDLKREGRPLQEGTGRQLNIDFRDVDIGELSSDVISHIDTFDVNEFDQY
LPPNGHPGAPGTAAGQVSYNGTYGISSSAVSQAAGGTAGHSWMTKSQSQQQHSLTTLGSG
GEQGQNQRTTTHIKTEQLSPSHYNDQQNSSPPQHVTYGSFNLQHYSSSSYPSITRAQYDF
SDHQGGTNSYYSHAAGGQGSGLYSFSSYMSPSQRPMYTPIADTTGVPSVPQTHSPQHHWD
QQPVYTQLSRP
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaatctactcgaccccttcctgaaaatgacagacgaacaagacaaatgtctctctgac
gcaccgagcccgagcatgtccgaggactctgcgggatccccgtgcccttccggctctggc
tcagacaccgagaacaccagaccttcagagaacggtctgctgatgggtccggacggcccc
ctcgtcgagttcaagaaggacgacgatgacaagttccccgtgtgcatccgcgacgcggtg
tcccaggtactgaagggctacgactggaccctggtgccaatgccagtccgagtgaacgga
tctagtaagaacaagccccacgtcaagagaccgatgaacgcttttatggtttgggcgcaa
gccgctcggagaaagctggctgatcagtatcctcatctgcataacgcggagctgagcaaa
actctggggaaactatggaggctactcaatgagggagagaagcgtccgttcgtggaggag
gcagaacgcttgagggtacagcacaagaaagaccaccccgactacaagtaccagccccgg
cggaggaagtccatgaagaacggacaaagcgagtctgaggacggcagcgagcagacgcac
atatcgccaggagcgatcttcaaggcgctccaacaagctgactctccagcctctagcata
ggagaagtgcactcccccggagaacactcaggccagtcccaagggccccccacccctccc
accactcctaagaccgacatccaggtgggaaaggtggacctgaagcgcgagggtcgcccc
ttacaggaaggcacgggccgccagctcaacatcgacttccgggatgtggacatcggcgag
ctgagcagcgacgtcatctcccacatcgataccttcgatgtcaacgagttcgaccagtac
ctgccccccaatggtcacccaggcgctcctggcactgctgctggccaggtctcctacaac
ggtacctatggcatcagcagctccgcagtcagccaggcagcagggggcaccgcagggcac
agctggatgaccaagagccagagtcagcagcagcactccctgaccacgctgggtagtgga
ggggagcagggtcagaaccagaggaccaccacacacatcaagacagagcagctgagcccc
agccactacaacgatcagcagaactcctcccctccacagcacgtcacctatggctccttc
aacctgcaacactacagctcttcctcctacccctccatcacccgtgcccagtatgacttt
tctgaccaccagggtggcaccaactcctactacagccacgcagccgggggccagggctca
gggctctactccttcagcagctacatgagccccagccagaggcccatgtacacccccatc
gcagacacaaccggggtgccctccgtgccacagacccacagtccccagcatcactgggac
cagcagccagtgtacacacagctctcccggccctga
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