Coregonus clupeaformis (lake whitefish): 121547192
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Entry
121547192 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121547192
04517 IgSF CAM signaling
121547192
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121547192
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NGL family
121547192
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
ig
LRR_14
V-set
Ig_2
VEGFR1-3_N_Ig-like
LRRNT
DUF7617
Pam3_Gp34
Zwei_Ig_N
Motif
Other DBs
NCBI-GeneID:
121547192
NCBI-ProteinID:
XP_041714266
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All DBs
Position
31
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AA seq
751 aa
AA seq
DB search
MHVVMVTSPSTPSPLLWLVQLLLWLHHHGPQLTEAVPPCPNPCSCSNQASRVICTRKSLE
DVPDSISVNTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGLVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPVLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSSSDSSNPYSFFTTVTVETVETNNGEDAGRQYINETYVPPDYLGP
TFSGGVLGKGRAGFTISPSRSSLSSFSPRATRNTENTVTVSIMDVTNITGLDDVMKTTKI
IIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGSGISGGST
MQSGCGGDGTLRMHHPEIVNLPNFGRSEHLNHYYKANHFNNNVMGLSIGTGAGVGTLSNK
NNPSPLNQQGQDIPISCTQVPISSATFQTMSGNGTNTNPLSVSPPLPMSLPMPPMGLHGS
IKGFMVQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgtcatggtgaccagcccctccaccccctcccccctcctctggttggtccag
cttttgctgtggcttcaccaccatggacctcagctgacagaggccgtgcccccatgtccc
aacccctgtagctgctccaatcaggcaagccgagtcatctgtacaaggaagagtttagag
gacgtaccggacagtatttctgtgaacacaagatacctcaacttacaagagaacacgatt
caggtgataaagtcagacacgttcaagcacctgcggcatttggaaatactgcagctctcc
aagaaccacatccgacaaattgaggtgggcgcgttcaatggcctgccaaacctcaacacc
ctggagctctttgacaatcgcctcacgctggtaccgtcacaggcctttgagtacctcagc
aaactgcgggagctctggctacggaacaaccccatcgagacactgccagcgtacgccttt
caccgcgttccctccctgcgccggctcgacctgggcgaactcaggaagctggactacatc
tccgaggccgcctttgagggcctggtcaacttgcgcttcctgaacctgggcatgtgcggc
ctgaaggacatccccaacctcacgcccttggtgagactggaggagctggagctgtcggga
aaccaactggggctcgtcaggccgggctccttccagggcctggtgtcgctgcgcaaactg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggagctcaacctgtcccacaactctctgcattcgctgccccacgacctcttcact
ccactgcaccagttggagcgggtgcacctcaaccacaacccctgggtgtgcaactgcgat
gtcctgtggctcagctggtggctcaaggagacggtgcccagtaacaccacatgctgcgcc
cgctgccacgcgccaccagtcctgaagggccggtacattggtgagctggaccagagccac
ttcacatgctacgctcccgtcatcgtagagccacccaccgacctcaatgtcacagagggc
atggccgcggagctgaagtgtcgcactggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacccacggatcgtaccgcgtcaggatctcagtccttcatgac
ggcaccctgaatttcaccaacgtgactgtgcaggacacaggccaatacacctgcatggtg
accaactccgccggcaacaccacggcgactgcagtgctcaacgtgtcctcctccgactcc
agcaacccctacagcttcttcaccactgtcactgttgaaactgtggaaacaaacaatggt
gaggatgctgggaggcagtacatcaacgaaacctacgtaccgccagattacctgggtccc
actttttcaggaggggtactgggtaaaggcagggctggattcaccatatctccatctcgc
tcttctctctcctctttctccccgcgagccaccagaaatactgaaaatacagtcacagtg
tcgataatggacgtcacaaacatcactggcctggacgacgtgatgaagaccaccaagatc
atcatcggctgctttgtggccatcaccttcatggcagccgtgatgctggtggtcttctac
aagctgaggaagcagcaccagctgcacaagcaccatggccccacccgcgccatcgagatc
atcaacgtggaagacgagattggtgccggggccgggagcggcatctcagggggatcgacc
atgcaatccgggtgcggaggagacggaacattgagaatgcatcacccggaaatagtcaac
cttcccaacttcgggcgatcagagcatcttaaccattactacaaggccaatcatttcaac
aacaacgtgatgggtctgagcattgggacaggggcaggagtcggtactctaagcaacaag
aacaatccgtctccacttaaccagcaaggccaggatatcccgatctcctgtacacaggtc
ccaatctcctcagccactttccagaccatgtctggaaacggcaccaacaccaaccctctt
tctgtttccccacctctgccaatgtccctccccatgccccccatgggattacacggatcg
atcaagggtttcatggtccagaaccagaatccacaaatggagcctcttctgttcaaggga
aactcaaaggaaaacgttcaagagactcaaatttga
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