Coregonus clupeaformis (lake whitefish): 121547414
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Entry
121547414 CDS
T08357
Symbol
itgb4
Name
(RefSeq) integrin beta-4 isoform X1
KO
K06525
integrin beta 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382
Cornified envelope formation
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04518
Integrin signaling
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121547414 (itgb4)
04518 Integrin signaling
121547414 (itgb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121547414 (itgb4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121547414 (itgb4)
04810 Regulation of actin cytoskeleton
121547414 (itgb4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121547414 (itgb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121547414 (itgb4)
04515 Cell adhesion molecules [BR:
cclu04515
]
121547414 (itgb4)
04090 CD molecules [BR:
cclu04090
]
121547414 (itgb4)
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121547414 (itgb4)
Exosomal proteins of bladder cancer cells
121547414 (itgb4)
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin beta subunits
121547414 (itgb4)
CD molecules [BR:
cclu04090
]
Proteins
121547414 (itgb4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Integrin_B_tail
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
PSI_integrin
EGF_Teneurin
I-EGF_1
EGF_integrin
EGF_2
EGF_TEN
MFS18
Motif
Other DBs
NCBI-GeneID:
121547414
NCBI-ProteinID:
XP_041714618
LinkDB
All DBs
Position
31:complement(28560447..28584670)
Genome browser
AA seq
1986 aa
AA seq
DB search
MGRWMLNLLVGVVLLAVLTASCYAEEVNHCLAARANTCSACIQSGKGCAYCPDEIFDGPR
CDLKDNIINHGCKSAVTAESSMSIERSEQINMLLKQSQVAPQEMSMTLLPGEEREIEMEV
FEPAKGPLDLYILMDFSNSMEDDLDNLKRMGAELAELVGKLSDDYTIGFGKFVDKVVEPQ
TDMRPSKLAQPWPNSDPPFSFRHVITLTSDLPTFTEKLQKERISGNLDAPEGGFDAILQA
AVCGDKIGWRGHATHLLVFSTESAFHYEADGANVLAGIMPRNDEQCHLDPEGKYTEDTKQ
DYPSVPTLVRLLGKHNIIPIFAITNHSFTYYQKLHEYFPIAELGLLQEDSANILSILEKA
FENIRSKISIRAEDRPKAIEAQVLSYSGNVAQAGTFKVKPGQIGKFKVRVKASEMVGEEH
VCNLEQGDKKGKMRVKPTTFSTALNINAEVLCKTCDCEKTPTENAVRCTGHGALVCGKCQ
CYVGWLGPFCNCSASASPDAGGSCLGPDVGEPCSGRGDCLCGTCVCYNTDQYEGPLCQFD
KSQCQRYGGFLCNDRGRCFMGQCACAEGWEGPACECPISNQTCLDTKGGVCNGRGVCKCG
RCECQDSGLPMTPTCEANFQAQLGMCEDKRSCVQCQAWKTGEKKDSDQCNQCKFKVVMVD
ELKENKEVIEACSFRDEDDDCTYHYTVDYPEDQTDKELEVQVLKKKDCPPAGFLWLIPLI
MFLMLLLGLLLLCCWKYCACCKACLALLPCCGRGRMVGFKEDQYMLRQSLLTSDHLDTPL
VRTGPPKSTDVVRWKITDNVHRSPNHPLAQVQPNPKETIQFPLSLRLNRLFTDSLSHPDA
RDTEMLRREVDDNLNEVYKHIPGAQKVQKTKFRLQRNAGKRKDHTIVDTVVSAPRSSYPD
IVKLTEKNVQSGNFQDLKVVPGYYTVATDKEAAGAVEFQEGVETVDVRVPLFIKEEDDDK
KQLQVEAVDVPLGIAEIGKRFVNITVIKEHAKSIMSFLQPSYTYSRQDGVANIPISREII
EDGHTQVTYRTRDLTAKDKKDYVTVDGDLSYGPGETQKTVPVRLLELGEGDGLLKDTQVK
QFVMDLTNPRQGAKLGRYPRTTVTITDQPEPSVMMFMKSTQNFSTADPTYSIPVVRTRNQ
EGPATVHWKTRNAKRFELSGPLKFGPGETEKNIVIDPLSHPGPVKPEVFQLELFDPSTNA
AVGERKTTMVTVTDGGLPENAQRQQQGMDFINQTAMSPGGRLFSPTNVKAKATGPRNIRL
NWDPLGSPLGYKVKYWIYGDPEADAQVMDVKTPHAELTNLYPFCDYEMKVCGYNALGDGN
YSDMVPCQTLEDVPSEPGRLAFNVISPTVTQVSWAEPAETNGVITNYEVLYTPINDDTKP
MGVAKKVKIDNPKKRMLLIENLQSAQTYCYKVRAKNSVGWGPFREATINLASQPVRPMSI
PIIPDIPIVDAEAGDEYDGYLMYSSEVLRSPTGSKRPSVSDEDQMNGRWEQNFLFPGGNN
SMSRSANMSSSSYSQMSPMSTLSSNHRGGAGGSMTTESTTTYLSGQGGNSLSRTQIIGGG
MRTENVVLRKRSENKGYYEYDDNIRDSIVIGDLSSGLSGYTDGKSTYGFSPTQTPSQYSY
SMSKVLRGRTQSEDVNDALLNLDRVLQDSRLAPGVPDTPTRLVFSALGPTALKVSWQEPH
CERDVLGYCVLYQLLNGGDVKRIDVSSPAENSVVVQDLLPNHSYLFKVKAQSLEGWGPER
EGVITIESAVNPNSPLSPMPGSPFTLSTPSAPGPLVFTALSPEALQLSWDKPRKPNGDIL
GYVVTCEQLHGGGDMRSFQVSGNSAETSLTVPDLSENMPYKFKVQARTTQGFGPEREGII
TIESQDGGSTSQIGGIGGMSQLGGLGGISQIEGLGGMSQYSSQSLTKRDVFQLPTEVSTR
TNVTHTMINDPYFSGDGMMMTGMTTQHTETSGMVTRHVTKEVVQRSMQVAGSSSVTKKVE
RSFYEA
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atggggagatggatgttaaatctcttggtgggagttgtacttcttgctgtcctcacggcc
agttgctacgctgaagaagtgaatcactgtctggctgcgagggctaacacctgttcagca
tgtattcagtcagggaagggctgtgcctactgtccagacgagatctttgatggaccccgc
tgtgaccttaaggacaacatcataaaccacggctgtaaaagcgcggtgacagccgaaagc
agtatgtcgatagagagaagcgagcagatcaacatgttgttgaagcagtcccaggtagct
cctcaggagatgtctatgactctgctgccaggggaggagagggagatagagatggaggtg
tttgaaccagctaaaggacctctggacctctatattcttatggacttctccaactccatg
gaagacgatctggacaacctcaagaggatgggtgctgagctggctgagttggtaggtaag
ctgtctgatgactacaccatcggcttcggcaagtttgtggacaaggtggtggaacctcag
acagacatgagaccatccaaacttgcccagccttggcccaacagcgaccctcccttctcg
ttccgtcatgtgatcactctgacctctgacctgccgaccttcaccgagaagctgcagaag
gagaggatctcagggaacctggacgctccagaggggggcttcgacgccatactgcaggct
gcagtctgcggggataagatcggctggcgtggccatgccacccacctcctggtcttctcc
accgagtctgccttccactacgaggcagacggtgccaacgtgctggcaggcatcatgcca
cgcaacgacgagcagtgccacctggatcccgaggggaaatacacagaggacaccaagcag
gactacccctctgtgcccactctggtccgcctgctgggcaaacacaacattatccccatc
ttcgccatcacaaaccactcctttacctattatcagaagcttcatgagtatttccccatt
gctgagttgggtctgctacaggaagactctgctaacatcctcagtatcctggagaaagcc
tttgagaatatccgttctaagatcagtatccgtgctgaggacaggcctaaagctatagaa
gctcaagtcctatcatacagtggcaatgttgcacaggctggaaccttcaaagtcaagcct
ggacaaatagggaagtttaaggtgcgtgtcaaagccagtgagatggttggggaggaacat
gtgtgtaatctggagcagggtgacaaaaaggggaagatgagagtcaaaccaacaaccttc
agcacagctctaaacatcaacgctgaagtgctctgtaaaacctgcgactgtgagaagact
cccactgaaaatgcagtgcggtgtacaggccacggcgccctggtctgtgggaagtgccag
tgctacgttggctggctgggtccgttctgtaactgctcagccagtgcgtcgccggacgca
ggtgggtcctgtctgggtcctgatgtgggggagccgtgttctggccgaggagattgcctg
tgtggaacgtgtgtgtgttacaacaccgaccagtacgagggacccctctgtcagtttgac
aagtcccagtgtcaacgatacggaggcttcctctgcaacgaccgtggtcgctgcttcatg
ggccagtgtgcgtgtgcagagggctgggagggaccggcctgtgagtgtcccataagcaac
cagacctgtctggacactaaagggggtgtctgtaacgggcgtggtgtgtgtaagtgcggt
cgttgtgagtgccaggactcgggcctgcccatgacccccacctgtgaggctaacttccag
gctcagctggggatgtgtgaggacaagaggagctgtgtccagtgtcaggcctggaagaca
ggagagaaaaaggacagcgaccagtgtaaccagtgcaagttcaaagtcgtcatggtggac
gagctcaaggaaaataaagaggtgattgaggcgtgtagtttccgtgacgaggatgatgac
tgtacgtaccactacaccgtggactaccctgaggaccagactgacaaggaactggaggtc
caggtgctcaagaagaaagactgtccccctgctggcttcctgtggctgatccctctcatc
atgttcctcatgttactgctgggtctactgctgctctgctgctggaagtactgcgcctgc
tgcaaggcatgtcttgctctactgccatgctgtggaagaggccgtatggttggctttaag
gaggaccagtacatgctccgccaatccctgcttacctctgaccacctggacacgccccta
gtgaggacaggcccgcccaagagcaccgacgtggttcgctggaagatcaccgacaatgtc
caccgatcacccaatcacccgctggcgcaggtccagcccaaccccaaagagaccatccag
ttccctctgtctctgcgtctgaacaggttgttcacagacagtctgtctcaccctgacgcc
agagacacggagatgttgcgcagggaggtggatgacaacctgaatgaagtgtacaagcat
attcctggagcccagaaagttcagaagaccaaatttagattgcagagaaatgctggtaaa
agaaaagaccacacaattgtagacacagtcgtgtccgctcctcgctccagctaccctgat
atcgtcaaattgactgagaaaaacgtccagtctggaaacttccaagatctcaaagtggtg
ccgggctactatacagtggccacagacaaagaggcggctggtgccgtggagttccaggag
ggggtggagacggtggatgtgcgcgtgccgctcttcatcaaggaagaagatgatgataag
aagcagctgcaggtggaggcggtagacgttcctctgggcatcgctgaaatagggaaacgc
ttcgtcaacataaccgtcatcaaagaacacgccaagagtattatgtcgttcctccagcct
tcgtacacttacagccgacaggacggagtggctaacatccccattagcagagagatcata
gaggacggacacacacaagtcacctaccgcacccgagatctcaccgccaaggacaagaag
gactatgtgacagtggatggggacctgtcctacgggccaggggagacccagaagactgtc
cctgtgcgtctgttggagctgggagagggagacggtctgctgaaggacacacaggtcaaa
caatttgtcatggacctcactaacccaagacagggagcaaagctgggacgctaccccaga
accaccgtcaccatcactgaccaaccagagcccagtgtgatgatgtttatgaagagcacc
cagaacttctccacagctgacccaacctactccattcctgtggtccgcacccgcaaccag
gaggggcctgccaccgtccactggaagacccgcaatgccaagcgcttcgagctgtccggt
cccctcaagtttggtcctggggagacggagaagaacatcgtgatcgacccactctctcac
cctggcccggtcaaaccagaagtcttccagctggagttgtttgaccccagtacgaacgct
gcggtcggggagaggaagacaacgatggtcacggttactgatggaggactcccagagaat
gcccagaggcagcagcagggaatggacttcatcaaccagacagccatgtctcctggtggt
cgtctcttctctcccaccaatgtgaaggctaaagccactggcccacgaaacatccgtctc
aactgggaccccttaggaagccccctgggctacaaggtgaagtattggatctatggggac
cctgaggctgatgcccaggtgatggatgtgaagaccccccacgctgagctgaccaacctg
taccccttctgtgactacgagatgaaggtgtgtggctacaatgccctaggagacggaaac
tacagcgacatggtgccctgtcagaccctggaggatgtccccagtgagcccggtcgtctg
gcgttcaatgtcatcagtccaactgtcactcaggtcagctgggcggagcctgccgagacc
aacggcgtcatcaccaactacgaggtcctctatacacccatcaatgacgacacaaagccg
atgggtgtagctaagaaggttaagatagacaaccctaagaagaggatgttgctaattgag
aacctgcagtcagcccagacctactgctataaggtccgggctaaaaacagcgttggctgg
ggtccattcagagaggcaaccatcaatctggcctcacagcccgtcagacccatgtccatt
cccatcatcccagacatcccaatagtggacgcggaggccggggatgagtacgacggctac
ctgatgtacagcagtgaggtcttgaggtcaccaacaggctccaagagacccagcgtctca
gacgaagaccaaatgaacgggaggtgggaacaaaacttcctgttccccgggggaaataat
tccatgtcgcgcagtgccaacatgtcttcttccagctacagccagatgtctcccatgtcc
accctcagctccaaccacagaggaggggccgggggttccatgaccacggagtccaccaca
acatacctctctggacaaggaggaaactcgctctcccgcacacagattattgggggcggg
atgcgcacagagaatgttgtcctgagaaagcggtcagagaacaaaggttactatgagtat
gacgacaacatccgagattccatcgtcataggagacctgtccagtggattgtctggatac
acagacggcaaaagtacatatggcttcagccccactcagactccgagtcagtacagctac
agtatgtctaaggtcttgcggggcaggacccagtctgaggatgtcaacgatgctctactg
aatctggacagggtgctccaggactctcgtttggcccctggggtccctgacacccccacc
aggctggtgttctctgccctgggccccactgccctgaaggtcagctggcaggagccccac
tgtgagagggatgtgctggggtactgtgtcctctaccagctgctcaatggaggtgatgtg
aaacgtatagacgtgtccagcccagcagagaactctgtggtggtgcaggacctgctgcct
aaccactcctacctgttcaaggtgaaggctcagagtctggagggctggggaccagagagg
gagggagtcatcaccatagagtcagccgtcaaccccaacagcccactcagtccaatgcca
ggttctcccttcactctcagtacccccagtgctccaggccccctggtgttcacagctctg
tcccccgaggcactgcagctgagctgggacaaaccccgcaaacccaacggagacatcctg
ggttacgtggtcacctgtgaacagctgcacggaggaggtgacatgcgttccttccaggtg
agcggtaacagcgctgagaccagtctgacggttccggacctgagtgagaacatgccatac
aagttcaaagttcaggccaggacaacccagggcttcggccctgagagggagggcatcatc
accatcgagtctcaggatgggggtagcacgtctcaaataggtggaataggcggtatgtct
caactaggaggcctaggtggtatttcccaaatagaaggcctaggaggtatgtctcagtac
agtagtcagtccttgacaaagagagatgtgttccaactgccgacagaggtcagcacccgc
accaacgtcacacacaccatgatcaacgacccctacttctcaggagacggtatgatgatg
acaggtatgacgacccagcacacagagaccagcggcatggtgacacgtcacgtgacaaag
gaggtggtccagaggagcatgcaggtggccggctccagcagcgtcaccaagaaggtcgag
aggtcgttctatgaggcctga
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