Coregonus clupeaformis (lake whitefish): 121547511
Help
Entry
121547511 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121547511
04121 Ubiquitin system [BR:
cclu04121
]
121547511
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121547511
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121547511
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like
zf-BED
ZBED1_RNase-like_helical
DBD_Tnp_Hermes
hAT-like_RNase-H
DUF8247
FAM200-ZBED5_RNase-like
DUF630
Motif
Other DBs
NCBI-GeneID:
121547511
NCBI-ProteinID:
XP_041714767
LinkDB
All DBs
Position
31
Genome browser
AA seq
599 aa
AA seq
DB search
MSKRSAVWQHFIVVKDDAKKVECKLCKQRFAYHSSTTNMTYHLKAAHPQYSTSTSTASSG
LTQTTLDQKSPISEKRKREITDGIVDFIALDMRPVNLIEGVGFKDMMKILEPGYTVPKRE
TVMHALTAKYENTKEKVLESIKNSQAVSFTTDMWTSLRMESYMTVTANFITEAWGLQCLV
LETKQMEENHTAATIAQRLGEVADKYEIPGCKRVAVVHDNAANMILCADILGREEKWAGV
KGIRCAGHTLQLCINATLNQDPICRTVAAARHLVAHFKKRAKARKGLKEKQKQQKVVEHV
LIQDVSMLWNSSQTMLARLIEQRWPVTAVLSDPNYTGKNERNLDLTTAQWNIAEDISNVL
KPIVTLTELQSEEENASLSATIPMLTNLKRRHLAAVEDDSPTTKSLKTRLVEESDKRWQL
KDQLFESSLYVQAAVVDPRFKLLSFLDDAKRDVAYINVSQLADRLSAEGDRDSSTSTDEE
EVPAPKRKKTDKEREIDMLMCGDGEKEDQGDSKKEVKYYLQDRTKVDAGPLAWWGKNEDR
YPKLARAAKYLLSIPATSTPSERIFSKAGFIFNKTRSSLLPENVDKLVFLSHNLKRLRK
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaggtctgcagtatggcagcatttcattgtagtaaaggatgacgccaaaaaa
gtggaatgcaaactctgcaaacagcggtttgcttaccatagttcgacaacgaatatgaca
taccacttgaaagcagcgcatccccagtacagcacgagcacctccactgctagctcaggt
ttaacccaaaccaccttggaccagaagtccccaatctcagaaaaaagaaagagagagata
accgatggtatcgtggacttcattgccttggacatgaggcccgttaacctgatagagggc
gtgggatttaaggatatgatgaaaatcctggagcctggttacaccgttcccaagagagag
actgttatgcatgctctgacagcgaaatatgagaacacaaaagagaaggttttggagtct
atcaaaaacagccaggcagtaagttttacaaccgacatgtggacctcactgagaatggag
tcttacatgaccgtaactgccaatttcattacggaggcctggggactgcagtgtcttgtg
ctggagacaaagcaaatggaggagaatcacaccgccgccaccattgcgcagagacttgga
gaagtggctgacaaatacgaaattccaggatgtaaaagggtcgctgtggtacacgacaac
gccgcaaatatgattttgtgtgcagatatactgggtcgggaggagaaatgggcaggcgtt
aaaggaatcagatgcgctggacacaccttacagctgtgcatcaacgccactctcaatcaa
gaccccatctgtcgcactgtggctgcagccagacaccttgtggctcattttaagaagcga
gcaaaagccagaaagggactaaaggagaaacagaaacaacaaaaggtggttgaacacgtc
ctgatccaagacgtttccatgctgtggaattcttctcagaccatgctagcgcgtctgata
gaacagagatggcccgtaacagcagtgctctccgaccccaactacaccgggaaaaatgaa
cgcaaccttgatctcaccacagcgcaatggaacatagcagaggacatttcgaatgtgctg
aagccgattgtcactctgacggagttgcagtccgaggaggaaaacgcatcattatctgca
accatacccatgctgaccaacctcaaacgccgccacttggcagcagtggaggacgacagc
cctaccactaagagtcttaaaacaaggctggtggaggaatccgacaaaagatggcagctc
aaagaccaactttttgagagtagtttatacgtccaagcagcagtcgtagacccccgcttc
aagctgctttcgttccttgacgatgcaaaacgggacgtagcctacatcaacgtgtcccag
ctggccgaccgtttgagcgccgagggagacagagacagctctacatccacggatgaagag
gaggtacccgcaccaaaaagaaaaaaaacggacaaggagcgggagattgatatgctcatg
tgtggagatggagagaaagaggatcagggagatagcaaaaaagaagttaagtattatctc
caagatagaacgaaagtcgacgctggaccactagcttggtgggggaaaaatgaggacagg
tatccgaagctggccagagcagcgaaatatctcctctccattccggccacctccactcca
tcagagcggatcttttccaaggcagggtttatattcaataaaacgaggagcagccttctg
cccgaaaatgttgacaagctggtgttcctgtctcataacttgaaaagattgaggaagtag
DBGET
integrated database retrieval system
