Coregonus clupeaformis (lake whitefish): 121547542
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Entry
121547542 CDS
T08357
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1
KO
K17908
autophagy-related protein 18
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04136
Autophagy - other
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121547542
04136 Autophagy - other
121547542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121547542
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121547542
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
121547542
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121547542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_NWD2_C
CPSF_A
BCAS3_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
RMC1_N
Motif
Other DBs
NCBI-GeneID:
121547542
NCBI-ProteinID:
XP_041714811
LinkDB
All DBs
Position
31:complement(10890670..10899025)
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AA seq
446 aa
AA seq
DB search
MEDRETSDGPGGPQDLISASFNQDTTSLSVGTKSGYRLFSVTSVDKMDCIHEGAECPDVY
IVERLFSSSLVVVVSLSMPRRMNVYHFKRGTEICNYSYSNNILSVRLNRQRLVVCLEESV
YIHNIKDMKLLKTLLNTPHNPSGLCALSVNHGNSYLAYPGSQTIGEIIVYNANNLSTVTM
IPAHDSPLAALTFNASGTKLASASERGTVIRVFTIPEGQRLFEFRRGMKRYVSISSLSFS
TDGQFLCASSNTETVHIFKLEHHSPSREEESPTWGVYVGKMFTAASTYLPSQVSDMMHQD
RAFATVRLNMFGLKNVCALATVQKLPRLLVASSDGHIYIYNIDPQEGGECVLVRKHRLFE
GDEEPQEEQQEEEELEDGRSLPPSTSPSNAATVALPSTPPSSTTLSGYSEDGGAEKGDVI
PEHEFTEGPVCLDDENEFPPVSNQSN
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccgggagacatccgacggtccgggagggcctcaagacttgatcagcgcatcg
ttcaaccaggacaccacgtctctatcagtgggcactaagtcaggctacagactcttctct
gtcacctcggtggacaagatggactgcatccatgaaggagcggagtgtccagacgtgtac
atcgtggagcggttgttctccagcagtctggtggtggtggtcagtctctccatgccccga
cgtatgaacgtctaccacttcaagaggggaacagagatctgcaactatagctactccaac
aacatcctctcagtcaggctcaacagacagaggctggtggtgtgtctggaggagtctgtc
tacatccacaacatcaaagacatgaagctgctcaagacgctgctcaacacaccccacaac
ccctcaggtctctgtgccctctctgtgaaccatggtaactcctacctggcgtaccctggc
agtcagaccatcggagagatcattgtctacaatgccaacaacctgagcacggtgacgatg
atcccagcccatgacagtcccctggcagctctcacattcaatgcgtcaggaaccaaactg
gctagcgcctccgagaggggtacagtgatccgagtgttcaccatcccagagggacagaga
ctgtttgagttccgcagagggatgaagaggtacgtgagtatcagctcgttgtcctttagt
acagacggccagttcctctgtgcctccagcaacacagagacggtccatatcttcaaactg
gaacatcacagccccagtcgagaggaggagtctcctacgtggggtgtgtacgtggggaag
atgttcacagcagccagcacctaccttccctcccaggtctctgacatgatgcaccaggac
cgggccttcgccactgtacgacttaatatgttcggactcaagaacgtctgtgccttggcc
acggttcagaagctgccgcgtctgctggtggcatcatcagatggacatatctacatctat
aacatcgacccacaggagggaggagagtgtgtgttggtcaggaaacacagactatttgaa
ggagatgaggagccacaggaagaacaacaggaagaggaggagcttgaggatggaagatcc
ctcccaccgtcaaccagcccatcaaacgctgccactgtggccctcccctcgacgccaccc
tcttctaccactctctcaggctactcagaggatggaggggctgagaaaggtgatgtgatc
cctgaacatgagtttacagagggacccgtctgtctggatgacgagaacgagtttcctcca
gtcagcaaccagagcaactga
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