Coregonus clupeaformis (lake whitefish): 121547585
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Entry
121547585 CDS
T08357
Symbol
sgca
Name
(RefSeq) alpha-sarcoglycan isoform X1
KO
K12565
alpha-sarcoglycan
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121547585 (sgca)
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Gene cluster
GFIT
Motif
Pfam:
Sarcoglycan_2
Sarcoglycan_2_C
FAM163
Syndecan
Motif
Other DBs
NCBI-GeneID:
121547585
NCBI-ProteinID:
XP_041714862
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Position
31:13721224..13731845
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AA seq
401 aa
AA seq
DB search
MADWTGWRFILTVCVASVLVVEADIKAYTPVGQLFVFELQRETFQNEFEPFLKHYAGRVY
NDPMLFKCNMQSFPDLPGWLRFTQRHHYDNGFLYGTPLAQGKSMIEITVTNKRSYDTFRD
RLIITIDPPVKRMPYQAEFFIPLREIEKVLPSTVQEEIRQDMMRMWKTDRLDFVNITSAL
DRGGRVPLPLAGHYEGVYVKVGSDQYFSECLLRLQTAEHRRQCEAGGRAKIPGDCKVCSY
PGNCVTWCKSTLIDLSGPVVLPPAPTMGPGILDAGGVYDPPESPPPRDFLPDYIVTVIVP
LALAIILCLLLAYIMCCRREGVERRDAKTPDIQLYHHHTIHGNTSELRSMAGGRGVPPPL
STLSMFNVRTGETAPPFQTDSTSIPLILAQQEINTDTLPRK
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcagactggacaggctggagatttattttaacagtttgtgtggccagtgtactggtg
gtcgaggcagacatcaaagcttatacccctgtgggacagctgtttgtgttcgagctgcag
agagagaccttccagaatgaatttgaacccttcctgaaacactatgcagggcgggtctac
aatgatcccatgctgtttaagtgcaacatgcagtccttcccggacctgcctggctggctt
cgatttacccagaggcaccactatgataacggcttcctctacggcaccccactggcccag
ggaaagagtatgatagagatcacagtgactaacaaacggagctatgacacgttcagagac
agactgatcataacgattgaccctccagtgaagagaatgccctaccaggctgagttcttc
atcccactgagggagattgagaaggtgctgccctctacagttcaggaagagatcaggcag
gatatgatgaggatgtggaagacagacaggctggactttgtcaacatcacgtctgcgttg
gaccgaggtggccgtgtccctctgcctctggctggacactacgaaggggtgtatgtgaag
gttggttcagaccagtacttctctgagtgcttgttgaggctccagactgctgaacacagg
agacagtgtgaggccgggggcagggccaagatccctggggactgcaaggtctgctcctac
ccaggcaactgtgtcacctggtgcaagtccacactgattgatctgtccggaccggtggtc
ctccctcctgcccccaccatgggcccaggtatcctggatgctgggggggtctatgaccct
cctgagtccccccctcccagagacttcctgccagactacattgtgactgtgatcgtcccc
ctggctctggccatcatcctgtgtctcctactggcctacatcatgtgctgcagacgagag
ggagttgagagaagagatgcaaagacaccagatatccagctctaccaccaccacaccatc
catggtaacaccagtgagctgcggagcatggctgggggtcgtggggtcccccctcccctc
tccaccctgtccatgttcaacgttcgcaccggggagacggccccaccattccagactgac
agcaccagcatccccctcatcctggcccagcaggaaatcaacactgacacactacccagg
aaatga
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