KEGG   Coregonus clupeaformis (lake whitefish): 121547597
Entry
121547597         CDS       T08357                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cclu04121]
    121547597 (hltf)
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121547597 (hltf)
Enzymes [BR:cclu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121547597 (hltf)
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121547597 (hltf)
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    121547597 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 DEAD zf-RING_UBOX zf-RING_2 zf-RING_5 zf-C3HC4_4 ResIII zf-ANAPC11 RING_XB3-XBAT31 Prok-RING_4 zf-rbx1 DUF5817 zf-Nse zf-RING_4 zf-RING_6
Other DBs
NCBI-GeneID: 121547597
NCBI-ProteinID: XP_041714879
LinkDB
Position
31:complement(14325026..14335316)
AA seq 979 aa
MQSRRWFGGAGFSFADDPVTETLSQAIRGTGEELDREPDAGVLFGSLHGSVVGLRYYTGV
VNKGEMVSLVRQPQNPFDRNAVMVANVYGSQVGHIKRELAASLANIMDNNFARVEGVVPF
RVNNQFTMPVVLSFWGREENRDAVVRQLTSRGFKLQTGPTVGKSIMRVDGSRDPPRKTVL
LTAEELKNAFDNLFENLMEDKNGEREAAEAVCTPLLPHQKQALSWMCVCENNTALPPFWE
DKGGLFYNTLTHSSVRERPLRVRGGILADDMGLGKTLTTIALILSNFHHGKPLCEPEKSS
PEPKAYTTARKTPEGKSGDGDQAEASGAPAGHSPCKRASQAVPQVLCVDMVEEDVVVVED
GDEDWVPEQKAKGRPQGGKSKATPTKKAAKTKGKAVSTSKKGGAVLEDLDFAAALSGLTQ
GAPQKKRVGKGKSVVAPVEASSSQSTDDPAARATLIICPVSVLSNWLDQLEQHVRADVKL
NVYLYYGSERNRDTHFLSSQHVVLTTYNVLAADHSGSASPLHAVSWLRVVLDEGHVIRNP
NAQQSKAVLNLNTQRRWILSGTPIQNNLRDLWMLVAFLRLKPFDVREWWNRVIQRPVTQG
DKTGLQNLQALVKCITLRRTKTSRVCGRPLVSLPERSVRIEEVELTQKEREEYELARTEG
RTTISRYVAEGTVLRNYADVLAILVRLRQFCCHPDLLGKTTTYTGVVAVTPAELRERLIV
KLRLVLGTGSDEECAVCLDSVRLPVITHCAHVYCRPCIAEVIRSEQEQARCPLCRSQIKA
SELVEFPQEEEEEESNLLENWRSSSKVDALMSSLLRLRSEDDSIRSLVVSQFTRFLTLLE
IPLREEGFKFVRLDGTMSQKRRAQVIQEFQSDAPGSPLIMLLSLKSGGVGINLSAASRVF
LMDPAWNPAAEDQCVDRCHRLGQKRDVVITKFIVKGSVEENMVKIQRQKQDLVEKAFGTK
NPSERKTSRVDEIRALMEL
NT seq 2940 nt   +upstreamnt  +downstreamnt
atgcagtccaggcggtggtttggtggggctgggtttagctttgcagatgacccagtcacg
gagacgttgtcccaggccatccgaggcacaggagaagagctggaccgagagccagacgcc
ggggtgctgtttggcagcctacatgggagcgtggtaggcctccggtattataccggcgtg
gtgaacaaaggggagatggtgtctctggtgcgtcagcctcagaacccgttcgaccgtaac
gcggtgatggtggcaaacgtctatggcagtcaggtggggcacatcaaacgagagctagct
gcatcgttggctaacatcatggacaacaacttcgccagggtggaaggggtggtgccgttc
agagtgaacaaccagttcaccatgcctgtagttctatccttctgggggagagaggagaac
agagatgcagtggtgaggcagctaacttcacgcggattcaaactgcagactgggcctaca
gttgggaaaagtatcatgcgtgtagacggttccagagatccgcccaggaagactgtccta
ctgactgcagaagagttgaagaatgcatttgacaatttatttgaaaacctaatggaggat
aagaatggagagagggaggcagcggaggcggtgtgtactccgctgctgccccaccagaag
caggctctgagctggatgtgtgtgtgtgagaacaacacggcgctaccccccttctgggag
gataagggggggctgttctataacacactcacacactcctctgttagagagagaccactg
agggtccgggggggcatactggctgacgacatgggactggggaaaacgttgaccaccatc
gctctgatcctctccaacttccaccacgggaagcctctgtgtgaaccggagaagtcttcc
cctgagccaaaggcctataccaccgcaaggaaaacccctgaagggaagagtggagatggg
gatcaggcagaagcgtccggggctcccgctggccactccccttgtaagagagccagtcag
gctgtaccccaggtgttgtgtgtggacatggtggaggaggatgtagtggtagtggaggat
ggggacgaggactgggtgcctgaacagaaagcaaagggaaggccacagggaggcaaatcc
aaggccaccccaacaaagaaagctgctaagaccaaagggaaagcagtcagcacctcaaag
aaagggggtgctgtgttggaggacctggactttgcagcagctctgagtgggttaacacag
ggagctcctcagaagaagcgtgtcgggaaaggtaaaagtgtagttgcgccggtagaagct
tcctcctcccaaagcacagacgacccagcagccagagccactctcatcatctgccccgta
tcagtactcagcaactggctggaccagttggagcagcatgtgcgagcggacgtcaagctg
aatgtgtatctgtactacggctcggaacgcaacagggacacacacttcctgtcctcacag
cacgtggtcctcaccacctacaacgtgcttgctgctgaccactcgggcagtgctagtccc
ctccatgcagtgagctggctgagagtggtcttggacgagggccatgttatcagaaaccca
aatgcccagcagagcaaggccgtactcaacctaaacacacagagacgctggatactctca
ggcactcccatccaaaacaacctgagggatctgtggatgctggtggcgtttctgcgtctg
aagccgtttgacgtcagagagtggtggaacagagtcatacagagacctgtcacacagggg
gacaagaccggcctgcagaacctgcaggcgctagtgaaatgtatcacgctgcgtcgtacg
aagaccagccgtgtgtgtggtcggcctctggtctctctgccagagaggagcgtcagaata
gaggaagtggagctgacacagaaggagagggaggaatacgagctggcacgcacagaggga
cgcaccaccattagcaggtacgttgcagaggggaccgtcctcaggaactatgcagatgtt
ctggctatcctggtcaggctgagacagttctgctgccatcctgacctactgggcaagaca
actacatacacaggtgtggtagctgtgactcctgcagagttgagagagcgtctgatagtg
aagctgaggctggtgctgggcactggctctgatgaggagtgtgctgtgtgtctggactct
gtccgtctgcccgtcatcacacactgtgcacacgtctactgcagaccctgcatcgcagaa
gtcatacgcagcgagcaggagcaggcgcggtgccccctgtgcagaagccagatcaaggcc
agtgagctggtggagtttcctcaggaggaagaggaggaggagagcaacctcttggagaac
tggaggagcagctccaaggtggatgctctaatgtctagtctgctcagactgcgcagtgag
gacgacagcatcaggagtctggttgtctctcagttcacacgcttcctcactctactggag
atcccactcagggaggaaggtttcaagtttgtgcgtctggacggcactatgagccagaag
aggcgggctcaggtcatccaggagttccagagtgacgcccctggcagcccattgatcatg
ctgctgtcactcaaatctggaggggtggggataaacctcagcgctgcctcccgtgtcttc
ctcatggacccagcatggaacccagcagcagaggaccagtgtgtggatcggtgtcaccgc
ctcggccagaagagagacgttgtcatcactaagttcatagtgaagggctccgtggaggag
aacatggtgaagattcagaggcagaagcaggatctggtggagaaggcttttggcaccaag
aaccccagtgagaggaagacgtcgcgtgttgatgaaatccgagccctgatggagctgtag

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