Coregonus clupeaformis (lake whitefish): 121547607
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Entry
121547607 CDS
T08357
Name
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121547607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121547607
03021 Transcription machinery [BR:
cclu03021
]
121547607
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
121547607
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121547607
RNA polymerase III system
TFIIIB
121547607
RNA polymerase I system
SL1/TIF-1B
121547607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
121547607
NCBI-ProteinID:
XP_041714893
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All DBs
Position
31:14625439..14630650
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AA seq
300 aa
AA seq
DB search
MEQNNSLPPFQGLASPQGAMTPGMPIFSPMMPYGSGLTPQPVTNTNSLSLLEEQQRQQQQ
QQQASAQQGGVPGGLGQTPQLYHSQTVTTTTLPGNTPLYTATPLTPMTPITPATPASESS
GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ
FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKTT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaacaacagtttgcctcctttccagggtcttgcctcccctcagggggcaatg
actcctggtatgcccattttcagccccatgatgccctatggcagtggtctgactccccaa
cctgtgacgaacaccaacagcctgtctctcctggaggagcagcagcggcagcaacagcag
cagcagcaggcttcggcccagcagggtggggtgccagggggcttgggacagacaccacag
ctttatcactcccaaacggtcacgaccaccacactgccaggaaacacccccctctatacc
gctacaccgctaacccccatgacacccatcacacctgccactcctgcctcggagagctct
gggattgtcccacagttacagaacatcgtatccactgtgaacttgggctgcaaacttgac
ttgaaaacaatagcactgcgagctagaaatgctgagtacaaccccaagcgatttgctgct
gtaatcatgagaatacgagagccaagaacaactgcacttatcttcagttctggaaaaatg
gtgtgcacgggagccaaaagtgaagagcagtcccgcctggcagccaggaaatacgccaga
gtcgtgcagaagttgggcttcccagccaaatttcttgatttcaagattcagaacatggtg
ggcagctgtgacgtcaaattccccattcggttagagggacttgtactaactcaccagcag
ttcagcagttatgaacctgagttgttccctgggctaatctacagaatgatcaaacccaga
attgtcctgttgatattcgtttcaggcaaagttgtattaacaggtgcaaaggtgagagga
gaaatttatgaagcatttgaaaacatctaccccatcttgaaaggattcaggaagacaacg
taa
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