Coregonus clupeaformis (lake whitefish): 121548180
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Entry
121548180 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121548180
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121548180
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121548180
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121548180
BRITE hierarchy
Motif
Pfam:
Hormone_recep
MAM
Motif
Other DBs
NCBI-GeneID:
121548180
NCBI-ProteinID:
XP_045065012
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All DBs
Position
29:complement(5829612..5842944)
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AA seq
360 aa
AA seq
DB search
MSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQQRDHHPHLNPQNPGEAVPLSPPYGLTDL
HEDLGGYMEEHSPEGGNCPASKGGSDSGGVVGFYLDIQPSPDQSGLDINEHLGQNISKSH
QDTCQYLREELQNMTWQAFFQEEIDTYQTKPEEVMWQLCAIKITEAIQYVVEFAKRIDGF
MELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNSTVYFDGKYAGTDVFKALGCDDLIRLVF
EFGKSMCVMHLSEDEIALFSAYVLMSADRTWLQEKVKVEKLQQKIQLALQHVLQKNGRED
VVLTKLICKVSTLRALVSRHTEKLTAFKATYPDVVQAHFPPLYKELFGSDVEQGSVSIDG
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgggacgcggtgaagtttggccgtatgtccaagaagcagagagacagcctgtat
gctgaggtccagaagcaccgtctacagcaggcccagcagagagaccaccacccccacctc
aacccccagaacccgggggaggccgtgcccctctctcccccctacggcctcaccgacctc
cacgaagacctgggagggtacatggaggaacacagtcctgaggggggcaactgcccagcc
tccaaggggggctctgactcaggaggagtggtggggttctacctggatattcagccgtct
cccgatcagtctggtctggatattaacgaacacctgggccagaacatctccaagtcccac
caggatacgtgtcagtacttgagggaggagctacagaacatgacctggcaggccttcttc
caggaagagatagatacctaccagacaaagccggaggaggtgatgtggcagctgtgtgcc
atcaagataacagaggccatccagtacgtggtggagttcgccaaacgcatcgacggcttc
atggagctctgtcagaacgaccagatagtgctgctcaaagcagggtctcttgaggtggtg
ttcatcaggatgtgtcgtgcctttgactctcagaacagcaccgtctactttgatgggaaa
tacgccgggaccgatgtcttcaaagcattaggttgtgatgatctgatccggttagtcttt
gagtttgggaagagtatgtgcgtcatgcatctctctgaggatgagatcgcactgttctca
gcctacgtcttgatgtctgcagatcggacatggcttcaggagaaggtgaaggtagagaag
ctgcaacagaagatccagctggctctccaacatgtccttcagaagaacggcagagaggac
gtggttctcactaagttgatatgcaaagtgtcaaccctgcgggcgttagtcagccggcat
acagagaagctgacggccttcaaagcaacctacccagacgtcgtccaagcccacttccct
ccactatacaaggagctgttcggctcagacgtagaacagggctccgtgtccatagacggc
tag
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