Coregonus clupeaformis (lake whitefish): 121548312
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Entry
121548312 CDS
T08357
Name
(RefSeq) cadherin-15
KO
K06809
cadherin 15, M-cadherin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121548312
04519 Cadherin signaling
121548312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121548312
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Major cadherins
121548312
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Sde0182_C
OCD_Mu_crystall
Motif
Other DBs
NCBI-GeneID:
121548312
NCBI-ProteinID:
XP_041715676
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All DBs
Position
32:3988279..4004612
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AA seq
806 aa
AA seq
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MASRGLAVLCVLVAGLCQVWSSGQAGREDLNPAILYPWRQKSSGGLSRVKRDWIIPPIRV
LENSKQVPENLVQIKSDKIFTGEVIYKLEGPGVDQDPKDLFEIDDKTGWIRSMIPLDREK
YRSFTLKAFALSPSGERLENPSTIEIVVLDQNDNRPNFSQKDFAGSVSEFSVPGTSVMSV
TATDADDPTTDNAILSYSIIGQESIPPLHINKTMFGINNETGSIYTRDVGLDREVVKGFR
LKLQVADMSGMGLTSFANAVIHVTDINNNPPRFSPDLYTMSAVENKVDFAIGWVNATDDD
EPGTGNWETKYTIAKGNPSGNFAIHTDPVTNEGILSVVKALDYESQEVYTLTLTVENVNP
LSIKAPKDPVSSATVVVTVVNENEAPRFNKDPIEIVVPESVVPGTVLASNIAYDPDNAKL
KYDILRDPEGWLNINHETGEITARKPFNVRSPHVKNNIYNAVIRVTDTDAGGISTTASLV
ITLRETNDFLPQLFPLMGTVCSESGRETSGLFLTAVDEDLPPHAEPFTFHLQDINVSANW
TIIQVNETHAVLRPLVELETGEYAVTVLVTDSGTPSLSAYAQVNVTVCPCGKDGECKTEA
AAIFGTRVGVSFIALLVIMASIALLLLLLLLAVAVGNCRRHHIKKGAGLLVGDSDDDIRD
NVLNYDEQGGGEEDENAFNIDLLRNPADVGPFPTSFCPPVSGIPRGKQPLRKDYPDNLPS
PSYPRKPPADPTDIEDFINDGLEAADHDPNVPPYDTALIYDYEGDGSLAGSLSSIASASS
DSDQDYDYLNDWGPRFKKLANMYDPR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagagggttggcagtgttgtgtgtgctggtggctggcctttgtcaggtctgg
agcagcggccaagcggggagggaggacctgaacccagcgatcctgtatccatggagacag
aagagcagtgggggtctgagcagggtgaagagggactggatcatccctccaatcagggtg
ttggagaacagcaagcaggtccccgaaaacctggtccagatcaaatcagacaagattttc
accggagaagtgatctacaagctggaaggaccaggggttgaccaggaccctaaggacctg
tttgagatagacgataaaacgggctggatcaggagcatgattcccctggacagagagaaa
tacagaagcttcacgctgaaagcctttgccctgtcgcccagtggcgagagactagagaat
ccctccacaattgagatcgtagtgctggatcaaaatgataaccggcccaacttctcccag
aaagactttgctgggtctgtttctgaattctccgtaccaggcacatctgtgatgtctgtg
actgcaactgatgctgacgacccaaccacagacaacgctatcctgagctactccatcatt
ggccaggagagcatcccgcctctccacatcaataagaccatgtttggcatcaacaacgag
acagggtccatttacacacgagacgtgggcctagaccgggaggtggttaaaggttttagg
ttgaaactgcaggttgctgacatgtcaggcatggggttgaccagttttgccaatgcagtc
atacatgtgactgacatcaacaacaatcccccacggttctccccagacctgtacactatg
tcagctgtggagaataaagtagactttgcgattggatgggtcaacgccacagacgatgat
gagccagggacaggaaactgggagaccaaatacaccatcgccaagggcaacccctctggg
aactttgccattcatacagaccctgtgaccaacgagggtattttgtcagtggtgaaggct
ctggactacgagtcccaagaggtgtatactctgactctgacggtggagaatgtgaaccct
ctcagcatcaaggcccccaaggaccctgtaagcagtgccacggtggtggtgaccgtggtg
aatgagaacgaggccccacgcttcaataaagaccccatagagatcgtggttcctgagtct
gtggtccctggcaccgtgctggccagtaacatcgcctacgatcctgataatgcaaaactc
aagtatgacatactcagagatcctgagggatggctgaatatcaatcacgagactggagaa
attacagctaggaaaccgttcaatgtccgctcccctcacgtcaagaacaacatttacaat
gcagtcatcagagtcacagacacagatgctggtggaatctcgaccacagcgtctctggtg
atcactttgcgggagaccaatgacttcctccctcagctgttccccctgatggggacggtg
tgcagcgagtcaggccgggagacatctggtctgttcctgactgctgtggatgaggacctg
ccccctcacgctgaacccttcaccttccacctgcaagacatcaatgtgtctgccaactgg
accattatacaggtcaatgagactcatgcagtgttgcgacccctggtagagctagagaca
ggggaatatgctgtcaccgtgttggtgactgactctggcacccctagtctcagtgcatac
gctcaggtcaatgtgactgtgtgtccgtgtgggaaagacggtgaatgtaagaccgaagct
gctgccatattcggaacacgagttggtgtcagtttcatcgccttactggtcatcatggcc
agcatcgcactcctgctattgttgctgctcctggctgtagccgtgggtaactgcagacgg
catcatatcaagaaaggagcagggctgctggtgggggattcagacgatgacatccgtgac
aacgtcctgaactatgacgagcagggtggtggagaggaggatgagaatgccttcaacatt
gacctactgagaaacccagcagatgtgggaccattcccaacatccttctgccctccagtc
tctggcatccccaggggaaagcagccacttaggaaagactacccagacaacctgccctcc
ccctcatatccacggaaacccccagcggaccccactgacattgaggacttcatcaacgat
ggcctggaggcagcagaccatgaccccaatgtccctccctacgacacagctctgatctat
gactacgagggtgatggctctctggcaggcagcctgagctccatcgcctcagccagctca
gacagcgaccaggactatgactacctcaatgactggggaccacgctttaagaaactggcc
aacatgtacgacccacgctaa
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