Coregonus clupeaformis (lake whitefish): 121548526
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Entry
121548526 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121548526
04148 Efferocytosis
121548526
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121548526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121548526
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121548526
Hops complex
121548526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-RING_16
DUF1664
DUF5600
zf_RING_Vps8
zf-RING_UBOX
zf-ANAPC11
DUF4446
zf-rbx1
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121548526
NCBI-ProteinID:
XP_041715925
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MSSILDEYEDSQSIRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESLGWNKLLGTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGKPAPVCCMEVERGLESKVFIIATTRKRLFQFVGRVA
DGSEQQGFSSIFSQNQELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLYGQ
LDYVRLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMLLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQDEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNRLGLLESDDGKHGVFQETRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMKDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQIHETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASDIHYDLKYTLRLCAEHGFLQACVLV
YKIMGLYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFLEVSPHLSTYKQTKLG
ELQKKLAAATQASKSRHRPSPKEKEKEEGNDTASLGKGSAGVSREQIKSDIDDIIACECV
YCGELMIKSIDKPFIDPQKLEEEKSSWL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaagactcgcagagcatcaggcaccctgtgcaacac
agtagccgcctgtctgcagccaacatcggcataacacactcagggtttgtgaatgtgaga
ctagaagaggagaaaccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccacttcgctgtctgcaacaatcagctatgcatgagtttagggaaggacactctt
ctgaggattgaccttgccaagccagaccagcccaaccagatagaactggggaggaaggat
gacagcagagtacacaagctcttcttggaccccacagggtcccacctggtgatttctctc
agtaccagtgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtctaggctggaacaagctactggggaccgagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccctgaccagtacttcaaacaggtccattccctg
gaggaggatgggaagccagctccagtatgctgtatggaggtggagcgaggtctggagtct
aaagtcttcatcatcgccaccaccaggaagcgcctgttccagttcgtaggtcgcgtggca
gacggttcagagcagcaaggcttcagctccatcttctcacagaaccaggagctgctgccc
agcttccaggagtttccctttaacatgggctacagtgagatcaccttctacacttccaag
ctcaggtcctgccccaaggccttcgcatggatgatgggtaatggagttctctacggtcag
ctggactacgtcaggctggactcactgctcagtgatgtgcaggtgtgggattacacccca
gacatagactttagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctccctgaccgcgtcaaggccatctgcaccctcaacggacaggtggtgtacgag
gacgttttccctgataagtttggcaccctgaagaaaatgatcaaagatcctgcaggaggc
ctggtgtggatttacactgagaaggctgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagtatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatgctcctggctaaggaggcagagcactgcttccagaac
aaacgctacctggagagtgccaagtgctacgccctgacccagaactactttgaagagatt
gctttgaagtttatcgaggcaaaacaggacgaggctctgaaagagttcctgctgaagaaa
ctcaataatttaaaacagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaaccgcctggggcttctagaatcagatgatgggaaacatggggtgttc
caggagacgcgtgatgagttccggaagttcctcagtagctccaaacacaaggagtgtctc
tataacaaccgtacgaccatctatgacctgctggctagccatggcaacgtggacgacatg
gtctacttctctgtcatcatgaaggactatgagagggtgatctcccaccactgtcagcat
gatgactatagcgccgccctggaggtgctctctaagcactgcgacgagaaactcttctat
aagttctcccccgtcctcatgcaacacatacctaagaaggtggtagatgcctggatccag
atgggcagcaggctggaacctaagaagctgatcccagccctggtcaactacagtcagatg
ggttctacacaacagatccacgagaccatccgctacatggagttctgcgtctaccagctc
acggtgacagaagaggccatacacaactatctgctgtccctctacgccaagtacaagcct
gatagtctcctgtggtacctggaacaggctggtacccacgcgtccgacatccactatgac
ttaaagtacaccctgaggctgtgtgcggaacatggcttcctccaggcctgtgttctggtc
tataagatcatggggctgtatgaggaagctgtcgatctggctctacaagtggatgtggac
ctggccaagtcgtgtgctgacctgcctgaggatgacgaggagttgaggaagaagttgtgg
ctgaagattgcccgtcacgtggtgcaggaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctgaagatagaagacatactgcctttcttcccagacttcgtc
accatagaccacttcaaggaggctatctgcagctctttagaggagtacaaccagcacata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagagccaggagaaatgcgctgcctgc
gacttccccctcctcaacagacccttctacctgttcctctgtggtcacatgttccactac
gactgcctcttcctggaggtgagccctcacctgtccacttacaagcagactaaactaggt
gagctgcagaagaagctggccgcagccactcaggcctccaagtctcgccaccgcccctcc
cccaaggagaaggagaaggaggaggggaacgacactgccagcctgggcaaaggaagcgct
ggggtcagccgtgagcagatcaagtctgacatcgatgacatcatcgcgtgtgaatgtgtg
tactgcggcgagctgatgatcaagtcgatcgacaagccgtttattgatccacagaagtta
gaggaggagaagtccagctggctctga
DBGET
integrated database retrieval system
