Coregonus clupeaformis (lake whitefish): 121548580
Help
Entry
121548580 CDS
T08357
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121548580
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121548580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_31
HTH_26
HTH_37
Motif
Other DBs
NCBI-GeneID:
121548580
NCBI-ProteinID:
XP_041715990
LinkDB
All DBs
Position
33:complement(7184060..7203733)
Genome browser
AA seq
504 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRTGMTKQEILHALDTLDRLDREHGDKFGRRTSYVGGAS
SSVSDPNSTTTNNTPNNTASVSAATTSSTTSSSCSSNNTNATSGIGSSSVTNTALASSST
NSTATQTQYLPPRGGLSPSPSNSYDTSPPPGPPPPSAVLSSPVSLVAMVQNGGRDSLAAT
PNGKLSPPRYPMNSAAAARAFGFEATEEELDIDDKVEELMRRDSSIVKEEIKSFLGNRRI
SQAVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYQLEKTTPGATLNMCPAPMALE
EMEWRQTPPPISTAPGNFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNA
VIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDD
IDGGDYTEQACDLPYFDKRPMARPFGFYRLEPTSPTQDDGPGHGDHQDPISLAVEMAAVN
HTILALSRTGGVPGDIKTEALDDD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacacagatgagcctcgcttcaccatcgagcagatcgacctgctccagagg
ctgcgacgtacgggcatgaccaagcaggagatcctccacgccctggacaccctagaccga
cttgaccgcgagcacggggacaagtttggccgtcgcacctcctacgtgggaggagcaagc
agctctgtgtccgaccccaatagcaccaccacaaacaacacccccaacaacactgcctct
gtttctgccgccaccacctcctctacaacatcctcttcctgtagtagtaataatactaat
gccaccagtggtattgggagcagtagtgttaccaacaccgccctggcctcttcctccacc
aactctaccgccacacagacacagtacctccctccacgcggggggctctccccctcgcct
agcaacagctacgacacctccccaccgcccggcccgcccccgccctctgccgtcctctcc
tccccggtgtcgctggtcgccatggtgcagaacggagggcgggacagcctggcggcgacg
cccaatgggaagctctcgccgccgcgttacccaatgaacagcgcggcggccgccagggcg
ttcgggttcgaggccacggaggaggagctggacatcgatgacaaggtggaggagctcatg
aggagggacagcagtatcgtcaaggaggagatcaagtcctttctggggaacaggagaatc
tctcaggctgtggtggctcaggtcacaggtatcagtcagagcaggatctctcattggttg
ctccagcacggctctgatctcagcgaacagaagaagagagctttctaccgctggtaccag
ctagagaagaccaccccaggtgccactctaaacatgtgccccgcccccatggctctggag
gagatggagtggagacagaccccaccccctataagcaccgcccccgggaacttccggcta
cggcgtgggagtcgctttacctggaggaaggaatgtctggctgtgatggagagctacttc
aatgacaaccagtaccctgacgaagccaagagagaggagatcgccaacgcctgcaacgcg
gtaatccagaaaccagggaagaagctatcggacctggagagagtcacatccctcaaagtc
tacaactggtttgccaaccgacgcaaagagatcaagagacgggctaatattgaagccaca
atcctggagagccatgggatagacgtccagagtcctggaggccactccaacagcgacgac
atcgatggaggggactacacagaacaggcctgtgacctgccctacttcgacaagagaccc
atggccagaccctttggcttctacaggctggagcccacttcacccacacaggatgatggt
ccaggccacggggaccaccaggaccccatctctctggctgtggagatggctgcagtcaac
cacaccatcctggctctgtcccggaccggaggggtgcccggcgacattaagacagaggcc
ctggacgatgactga
DBGET
integrated database retrieval system
