Coregonus clupeaformis (lake whitefish): 121548774
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Entry
121548774 CDS
T08357
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121548774
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121548774
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
121548774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
ANAPC4_WD40
WD40
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_NUP159_NUP214
KNTC1_N
Beta-prop_VPS8
Lgl_C
CFAP43_N
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Synaptobrevin
WD40_like
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
121548774
NCBI-ProteinID:
XP_041716264
LinkDB
All DBs
Position
33:complement(20775596..20897154)
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AA seq
1149 aa
AA seq
DB search
MKKFNIRKVLDGLKEQASSSASSGQSGALENNLMHETLQSENFQLCKTVRHGFPYQPSSM
AHDPVQKILAIGTQSGALRLFGRPGVECYCQHESGAAVISLQFLINEGALVSALADDSVH
LWNLRQRRPAILHSLKFNRERITFVHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMW
NKAIELSSKAHPGPVVHISDNPMDEGKLIIGYEAGIVVLWDLKSKKADYRYTYDEAIHSV
AWHHEGKQFICSHSDGTLTIWNIKGQGKPFQTITPHGKQPKDGKKPEPCKPILKVEYKTT
RLGDPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYSNDFQEPY
AVVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQ
KRQGYSKKEWPISGGNWGLGTQSYPEIIITGHADGTVKFWDASAIMLQVLYKLKTAKVFE
KSRINKEDKQNTEIVDEDPYAIQIMAWCPESRMLCVAGVSANLIIYRFSKQEITTEVVQL
LEVRLQYEVNDMESPPEGGGGGDRDLPTPGTASPSPQTTGPPTHPSTSSNSSDGVRDNVP
CLKVRSTPLKQSPGYQVELVVQLVWVSGEPPQQITSLALNSSYGLIVFGNSNGLAVMDYL
QKTVLLNLGTVELYGSNDPYQRQPRSPRKTRQPSGGNGLCDINEGSASEDRCKSPTSVLA
SNHQQFYNGGGGRGAKMSRKLSLPTELKPDLVLLSVCPPRGANPLDHRDNSFSRSRSSSV
TSIDKEAREAITSFHFCETFARKGESAITPCLYVGTSLGTVLAVALNLPPAGEQRLLQPV
IVLPSGTLARLKGSILRMAFLDNTGTFLPPASETWYEPNAAGADSEERDKARKRRPVSVS
PSTSQELQESQYAVVCSEKQAKVIALPSQNCIFKHSITETSFVLRADVVQMNIGNCVACF
CANGHIMTLSLPGLRPLLDVNYLPLTDMRIARTFCFTNLGQAMYLTSPTEIQRITYSQET
CENLQEMLGELFTPVETPEAPNRGFFKGLFGGGATSLDREELFGETQAGKASRGLAQHIP
GPQGLEGMKGAASGVVADLARARIALDERGQKLGELDERTAAMLASADSFGKHAHDMMLK
CKDKKWYQF
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaacatcaggaaggtgctggacggcctaaaggagcaggcgtcttcctcg
gcttcgtctggccagtcgggtgccctggagaacaatttgatgcacgagacccttcagtcc
gagaattttcagctctgcaagactgtccgtcatggcttcccctatcagccgtcgtccatg
gcccatgacccagtccagaagatcctggccattgggacccagagcggggcactcagactg
tttggtcgtccaggtgtggagtgctactgtcaacatgagagtggagcagccgtcatctcg
ctacagtttctcatcaacgagggggcgctggtgagtgctctggcagacgacagcgtgcac
ctctggaacctgaggcagaggaggcccgccatcctccactcactcaagttcaacagagag
aggatcacattcgtccacctgcccttccagagtaaatggctgtacatcggcacagagaaa
ggaaacatccacatcgtcaacgtagagtcgttcacactctcaggctacgtcatcatgtgg
aacaaagccatcgaactatcctccaaggcccacccaggtcctgtggttcacataagtgac
aaccccatggatgagggaaagcttatcattggatatgaggctggaatcgtggtcttgtgg
gacctgaaatctaagaaagcagactaccgctacacttacgacgaggcgatccactcggtt
gcctggcaccatgagggcaagcagttcatctgtagtcactcagacggaacgctcaccata
tggaacatcaaaggccagggcaagccatttcagacaatcaccccacatggaaagcagccc
aaggatggaaagaagccagagccctgcaaacccatcctcaaagtggagtacaagaccact
agactgggagaccccttcatgatcctgtctggaggtctgtcgtatgacacggtgggtcgg
cggccatgtctgacggtgatgcatgggaagagtacagccgtgctggagatggactatccc
atcgtagacttcctcacgctttgtgagacgccatactctaacgattttcaggaaccttat
gccgtagtggtccttctagaaaaggatttagtagtaatcgaccttgcacaaaatggttac
cccattttcgagaacccctatccactgaccatccacgagtctccggttacctgctgtgag
tactttgctgactgccctgtggacctcatacccgcactttactctgttggatccagacag
aaacgacagggctacagcaaaaaggagtggcccatcagtggtggtaactggggcctcggc
acacagagctaccctgagatcattatcactgggcatgctgatgggactgtgaagttttgg
gatgcttctgcaataatgctccaggttctgtacaaactgaagacggccaaggtgtttgag
aagagcaggattaataaggaggacaagcagaacacagagattgtggatgaggacccgtat
gccatccagatcatggcctggtgtcctgagagcaggatgctgtgtgtggccggggtgtct
gccaacctcatcatataccgcttcagcaagcaggagatcaccaccgaggtcgtacagctg
ttggaggtacgtctgcagtacgaggtgaatgacatggagtcccctccagaggggggagga
gggggggaccgtgacctgcccaccccaggaacagcctcacctagcccccagaccaccgga
cccccgacacacccctccaccagcagcaactcctctgacggggtccgagacaacgtaccc
tgcctcaaggtgcgtagtacccctctgaagcagtctccagggtaccaggtagagttggtg
gtgcagctggtgtgggtaagtggagagcccccccaacagatcaccagcctggccctcaac
tcctcctacggcctaattgtgtttgggaacagtaatggtctggcggtgatggactacctc
cagaagacagtgttgttgaacctggggacagtggagctgtatgggtctaacgatccctac
cagagacagcctcgctctccacgcaagacacgccagccatccggaggtaatggtctgtgt
gacatcaacgagggttctgcctcggaggaccgctgcaaatcccccacttcagtgttggcg
tcaaaccatcagcaattctacaatggaggtgggggtagaggagcaaagatgtcacggaaa
ttaagcttgcctactgagctaaagccagacttggtcctcctgtctgtatgtcctccacgg
ggcgccaacccattagaccaccgggataactccttcagccgttcacgctcctcctccgtc
acgtccatcgacaaggaggcgcgcgaggccatcacctccttccacttctgtgagacattc
gcccggaagggggaaagcgccatcacaccctgcctgtacgtgggcacctccctgggaaca
gtgctggctgtggccctcaacctgccccctgctggggaacagaggctgctgcagcccgtt
atcgtcttgcctagcggtaccctggcgcgtctgaagggcagtatcctgaggatggccttc
ctggacaacacaggaaccttcctcccccctgcctctgagacctggtacgagcccaacgcc
gcaggcgccgacagtgaggagcgagacaaggcccgtaaacgccgcccggtctctgtgtcg
ccctccacctcccaggagctgcaggagagccagtatgcggtggtgtgctctgagaaacag
gctaaggtcatagcactgccctcacagaactgcatcttcaaacacagcatcacagagaca
tcgttcgtcctgagggctgacgtggtccagatgaacatagggaactgtgtggcttgcttc
tgtgctaacggacacatcatgaccctcagtctgccggggctgagaccgttgctagatgta
aactacctgccgctgacagacatgcggatagcccggaccttctgcttcaccaacctgggc
caggccatgtacctcacctcccccactgagatacagaggatcacatacagccaggagacc
tgcgagaacctgcaggagatgcttggagaactgttcacaccagtggaaaccccggaggct
cccaaccgaggatttttcaaaggcctttttgggggaggagcaacttccctggacagagag
gaactatttggtgagacacaggcgggtaaggcgtcccgtggccttgcccagcatatccca
ggtcctcagggcctggagggcatgaagggggccgcttcgggcgtggtggcggacctggcg
cgtgcacggatagcgctggacgagagagggcagaaactgggcgagctggacgagaggacg
gccgccatgttggccagcgccgactcctttggaaaacacgcccacgacatgatgctgaag
tgtaaagacaagaagtggtaccagttctga
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integrated database retrieval system
