KEGG   Coregonus clupeaformis (lake whitefish): 121549011
Entry
121549011         CDS       T08357                                 
Name
(RefSeq) histone deacetylase 2 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082  ATP-dependent chromatin remodeling
cclu03083  Polycomb repressive complex
cclu04110  Cell cycle
cclu04330  Notch signaling pathway
cclu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121549011
   03083 Polycomb repressive complex
    121549011
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    121549011
   04350 TGF-beta signaling pathway
    121549011
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    121549011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121549011
Enzymes [BR:cclu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121549011
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121549011
   HDAC complexes
    Sin3A-HDAC complex
     121549011
    BRAF-HDAC complex
     121549011
    REST complex
     121549011
    SHIP complex
     121549011
    MiDAC complex
     121549011
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121549011
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121549011
  Chromatin remodeling factors
   NuRD complex
    121549011
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121549011
NCBI-ProteinID: XP_041716712
LinkDB
Position
33:31300174..31316790
AA seq 487 aa
MAYTVAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVVAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGVDDESYE
QIFKPVMARVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTEIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTLEY
MDKIKQRLFENLRMLPHAPGVQMQMIPEDAIPDDTMDEDTENPDKRMSIRASDKRIACDE
EFSDSEDEGEGGRRNEANHKKRTKRARVEEGGKKEKVELEKAKETSTEKTDTKSTLSSVK
TEQTSSA
NT seq 1464 nt   +upstreamnt  +downstreamnt
atggcttacaccgttgcaggtggaactaagaagaaagtctgctactactatgacggtgac
attggaaattattattatggacaagggcatcccatgaaaccacaccgaattcgcatgacc
cacaacctactgttgaactatggactgtacagaaaaatggaaatatatagaccacacaaa
gccactgcagaggaaatgaccaaataccacagcgacgattacatcaagttcctcagatcc
atccgaccagacaacatgtcagagtacagcaagcaaatgcagaggtttaatgttggtgag
gattgtcctgtctttgatgggttgtttgagttttgccagttgtctactggtggctctgct
gcgggatcggtgaaactcaacaggcagcagacggacattgcggtgaactgggccggtgga
ctccaccacgctaagaagtctgaggcctctggcttctgttacgtcaatgacatcgtcgtg
gccattctggagctcctcaagtaccatcaaagggtgctgtacattgatattgacatccac
catggggatggagtagaggaggccttctacaccacagacagggtcatgaccgtgtccttc
cacaaatatggagagtacttccccgggactggagacctcagggatattggagctggaaaa
ggcaaatattacgctgtcaacttccccctgagggatggcgttgatgatgagtcgtatgag
cagatcttcaagcctgtgatggccagggtgatggagatgtaccagcccagtgcagtggtg
ctgcagtgtggagcagactccctctcaggagaccgactgggctgcttcaacctcaccatc
cgcggtcatgctaagtgtgttgagtacatgaagtcgttcaaccttcccctgctaatgctg
ggtggaggaggctacaccattcgcaacgtggcccgctgctggacctacgagacggccgtg
gctctggacactgagatccctgacgaactgccatacaacgattactttgagtactttggg
cctgacttcaagttgcacatcagcccatccaacatgaccaaccagaacacattggagtac
atggataagatcaagcagcgtctgtttgagaacctgcggatgctacctcacgccccggga
gtgcagatgcagatgatccctgaggacgccatccctgatgatacaatggatgaggataca
gagaaccctgacaaacgcatgtccatccgtgcttcagacaagaggatagcctgcgacgag
gagttctctgactctgaggacgagggcgagggaggaaggaggaacgaagccaatcacaag
aaaagaactaaacgggctcgagtagaggagggagggaagaaagaaaaagttgagttggag
aaagcaaaggaaacaagcactgagaaaactgacacaaaaagcacactttccagtgtgaag
actgagcagactagcagtgcctga

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