Coregonus clupeaformis (lake whitefish): 121549261
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Entry
121549261 CDS
T08357
Name
(RefSeq) high-affinity choline transporter 1-like
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121549261
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121549261
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
121549261
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Gene cluster
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Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
121549261
NCBI-ProteinID:
XP_045064376
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Position
28:32072994..32080024
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AA seq
571 aa
AA seq
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MEMALNWPGLLSIGVFYLIVLATGVWASRKSKREERKCTGNLSEVAMVGGRNLNIWVSIF
TTTATWVGGGFILGNAEVIYDPKRGLAWAIGPIGFSLSLVVGALFFVKPVREKNYVTIMD
PFQEKYGNTLTAILFVPSLLADIFWIACVLAALGGTVSVIMDIPSPLAVALSAAVAVLYT
LLGGLYSVAYTDVIQLIFMFLSLWFCVPFILMSPASADITVTAVTKLYQEPWTGRLKLAD
AGRWLDDLLLVTLGGICYQAFYQRVLATATVAQAQFTCYAASVVCFILSIPPLLIGAVAA
STDWNQTSFGLPTPFEQGKAGMILPISLHHLCPPFVSLAGIGAIAAAVMSSIDSALLSSA
SLFARNIYKNIISKRASEKEILLVVKVSILLFGLMGAGLAMTTSSVYVFWMLSGDVMYSV
VCAQLICVLFLPGKVNGYGALAGLVVGLLLRLLVGEPLLGVPGLMPLPWDSLHDDGRLLH
VFPFRTSIMLVSLATILVVSRFVTCLFLKGLLPDNWDVYGLGQKMMVLMKDMVDKDPTEK
IGLNTRQLYPIPHANKEDMSSLQWPGVPSCK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggagatggcactcaactggcctggcctgctgtcgattggggtgttctacctcattgtc
ctcgcgacaggcgtctgggcgtcaaggaagtccaagcgtgaggagaggaagtgcactgga
aaccttagtgaggttgccatggttggagggcggaacctcaacatctgggtcagcatcttc
actaccacagctacatgggtgggaggaggtttcatcttaggcaatgctgaggtgatctat
gaccctaaaaggggcctggcctgggccatcggaccgataggcttctccctcagcctcgtt
gtaggtgcattgttctttgtgaaaccggtccgagagaagaattacgtcaccataatggat
ccgttccaggagaagtatgggaacacgttaactgctattctctttgtcccatccctcctt
gctgacatcttctggatagcctgtgtgctcgctgcattggggggaacggtgagtgtaatc
atggatatcccatcacccttggctgtggccctgtctgctgccgtggcagttctctacaca
ctgctgggagggctgtattcggtggcctacactgatgtcatccagctcatcttcatgttc
ctcagcctgtggttttgtgtgcccttcatactgatgagccctgcctcagcagacattaca
gtcacagctgtgacaaaactgtatcaggagccatggaccggcaggctgaagttggcagat
gcagggcgctggctggatgacctgctgctggtgactctaggtggaatctgttaccaggcc
ttctaccagagggtcctggccacagccactgtggctcaggctcagttcacctgctatgct
gcctctgtcgtctgcttcatcctctccataccacctcttctcattggtgctgtggcagca
tccacagattggaaccagaccagttttggtctacctactccctttgagcagggcaaggcg
ggtatgattctgcccatctccctgcaccacctgtgcccgcctttcgtctctcttgctgga
atcggcgccattgctgctgccgtgatgtcatcgattgactctgccctgctgtcttctgcg
tccctttttgcccgaaacatctacaaaaacattatcagcaaaagggcctctgagaaagag
attctactggttgtgaaggtgtccatcctactgttcggtctgatgggggcgggcttggca
atgacaacctcctctgtgtatgtattctggatgctcagtggagatgtgatgtactctgtg
gtctgtgcccagttgatctgcgtcctctttctgcctgggaaggtcaatgggtatggtgcc
ttggcaggccttgtggtagggctactgctgcggctcctagtgggagagcccctgcttggt
gtgcccggactcatgccccttccctgggacagcctacatgatgacgggcgtctgctgcat
gtcttccccttccgcaccagcatcatgttggtctctctggccaccattctggttgtatca
cgttttgtaacctgccttttccttaaagggctcctgcctgacaactgggatgtatatgga
cttggccaaaaaatgatggttttaatgaaggatatggtagataaggatccgactgagaag
attggactgaacacaaggcagctgtaccctattcctcatgcgaacaaagaagatatgagc
tctttacaatggcctggggtcccatcatgtaaatag
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