Coregonus clupeaformis (lake whitefish): 121549574
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Entry
121549574 CDS
T08357
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121549574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121549574
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121549574
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
121549574
NCBI-ProteinID:
XP_041717296
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Position
34:32758989..32760992
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AA seq
395 aa
AA seq
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MSSPDAGYASDDQTQARCAMSVMMPGMGHCQWGDPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQSTSLVGDSWEYKEGLGLGY
HHEHSYQVSPQSLVHYRDAQALGGASYEPYSLPTPDTSPLDAVESDSMFFPGHSQEESHV
MPAYAYHSQGAEYPPQDPHSNQHTNHMLQRHHSSPTEQQQVSQAGPMPPSFNQLAMYYSQ
HCSPSHPKRHPGHGAGQRSPPPDSHPADQVEQMHPSELIGEVDRSEFEQYLNSSRPGDMT
GLSYGAHEANMQGPESLISSVLSDASTVFYYNYNS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagtgacgatcagacccaggctaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtggggagaccccctgagccctctcggc
gacaccaaagtgaagagcgagtcgtgcgcgaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggcgacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aagcgactggcacaacaaaatccggacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgagaagcggccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccccaactacaagtaccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatggtgtgtccgaccac
cagagcacctccctggttggggacagctgggagtataaggagggcctggggctgggttac
caccatgagcatagctaccaggtgtcgcctcagtcccttgtccactaccgcgacgcccag
gccctcgggggggcttcctacgaaccctacagcctgcccacccccgacacctccccactg
gacgcggtggaatcagactccatgttcttccctggccactctcaggaggagagccacgtg
atgcccgcatacgcctaccactcccagggggcagagtacccgccacaggaccctcactcc
aaccagcacaccaaccacatgctccaaagacaccactcctcccccactgagcagcagcaa
gtctcccaggctggccccatgcccccctccttcaaccaactggccatgtactacagccag
cactgtagccccagtcaccccaagcgacacccaggccatggggcaggacagcgctcccct
ccccctgactcccacccagcagaccaggtggagcagatgcacccctcagagctgataggg
gaggtggaccggagtgagtttgagcagtatctgaactcctccagacctggggacatgaca
ggcctgtcttatggggcacatgaggccaacatgcagggacctgagagcctgatatcctct
gtgctctctgatgccagcacagtgttctactataactacaactcctaa
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