KEGG   Coregonus clupeaformis (lake whitefish): 121549652
Entry
121549652         CDS       T08357                                 
Name
(RefSeq) WD repeat-containing protein 48
  KO
K15361  WD repeat-containing protein 48
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    121549652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121549652
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     121549652
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_Vps41 WD_LRWD1 Beta-prop_IP5PC_F WD40_RFWD3 WDR54 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 121549652
NCBI-ProteinID: XP_041717375
LinkDB
Position
34:complement(3826709..3841128)
AA seq 675 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALTRLFTAGRDSIIRIWSVN
QHKDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVK
ALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGT
VIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQ
QRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDLRMLICEEKAPVLKME
LDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDCTTPLTPLCTQPDQVVKGGA
SIIQCHILNDKRHILTKDTNNNVAYWDVLKACKGEDLGKMEFDEEIKKRFKMVYVPNWFS
VDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGADPKLNLGGLLLQALLEYWPRTHINP
MDEETEMNHVNGEHESRIQKGNGYFLVPPHTPVIFGETGGRTLFRLLCRDSGGETESMLL
NETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVYE
KIINLDNESQTGTSGNNEKPSEQKEEEDVAMLAEEKIELLCQDQVLDPNMDLRTVKHFIW
KSGGDLTLHYRQKST
NT seq 2028 nt   +upstreamnt  +downstreamnt
atggcgactcatcacaggcagaatgctgctgggcggagaaaagtccaggtatcgtatgtg
attagggatgaggtggagaagtataaccgcaatggggtgaatgccctgcagctcgacccg
gccttgacccgcctcttcacagctggccgagactccatcattaggatatggagcgtcaac
cagcacaaggacccgtacattgcgtcgatggaacaccacacggactgggtcaatgacatc
gtcctctgttgcaatgggaagacattgatatctgcttcctcagacaccacagtgaaagtc
tggaatgcgcataagggattctgcatgtccacattgcgaacacacaaggactatgtcaaa
gccttagcctatgccaaggacaaggagctggtggcctcagcggggctggacagacagatc
ttcctatgggacgtcaacacgctaacggcactgactgcctccaataacacagtcaccacc
tcctcactgagtgggaacaaagactccatctacagtctggctatgaatcagatgggcacc
gtcattgtgtcagggtccactgaaaaggtactgagagtctgggatcctcgaacctgtgcc
aaactgatgaagttgaaaggtcacacagacaacgtcaaatcattactgctaaacagggat
ggcactcagtgtctctcgggcagctcggatgggaccatccggttgtggtcgctggggcag
cagcggtgcatcgctacctaccgggtgcacgatgagggcgtgtgggccctgcaggtcaac
gaggccttcacgcacgtctactctggtggccgcgaccgcaagatctactgcaccgacctg
aggaacccagacctccgcatgctcatctgtgaggagaaggcccctgtcctcaagatggag
ctggaccgctcagctgacccccccacagccctctgggtctccaccaccaagtccaccgtc
aacaaatggtctctgaagggaattcataatttcagagcatctggagattacgacaacgac
tgcactactcccctgacgcctctctgcacacagcccgaccaggttgttaaaggcggagcc
agcattattcagtgccacattctgaacgacaagagacatatactaaccaaagatactaac
aacaacgttgcatactgggatgttttaaaggcgtgtaaaggggaagacctgggaaagatg
gagtttgacgaagagattaaaaagaggtttaaaatggtgtatgtgccaaactggttctct
gtggatcttaaaactgggatgttgaccatcacgctggatgagagcgactgctttgctgcg
tgggtgtcggccaaagatgcaggcttctccagtcctgatggggctgaccccaaattgaac
ctgggtggactgctgctgcaggccttactggagtattggcctcggacacacatcaaccct
atggatgaagaaacagagatgaatcacgtgaacggggagcatgagagcaggatacagaaa
gggaacggctacttcctggttccccctcacactccagtcatctttggagagacaggggga
aggaccttattcaggttgttgtgtcgagactcgggtggtgagactgagtccatgttgctc
aacgagaccgtgccacagtgggtcatcgacatcaccgtggataaaaacatgcccaaattc
aacaaaatcccattctacctccagcctcattcttcctctggtgcaaaaaccttaaagaag
gaccgcctgtcggccagcgacatgctccaggtgaggaaggtgatggagcacgtatacgag
aagatcatcaacctggacaacgagtctcagacggggacctcggggaacaacgagaagccc
agcgagcagaaggaggaggaggacgtggccatgctggccgaggagaagattgagctgctc
tgtcaggaccaggtattggatcccaacatggatctgcggacggtcaagcattttatctgg
aagagcggcggagacctaacccttcactatcggcagaagtccacgtga

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