Coregonus clupeaformis (lake whitefish): 121549659
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Entry
121549659 CDS
T08357
Name
(RefSeq) laminin subunit alpha-1-like isoform X1
KO
K05637
laminin, alpha 1/2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121549659
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121549659
09142 Cell motility
04820 Cytoskeleton in muscle cells
121549659
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
EGF_laminin
Laminin_B
Laminin_N
EGF_LMN_ATRN
Laminin_I
Laminin_II
Laminin_G_3
F5_F8_type_C
ARA70
Motif
Other DBs
NCBI-GeneID:
121549659
NCBI-ProteinID:
XP_041717386
LinkDB
All DBs
Position
34:4815477..4898309
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AA seq
3086 aa
AA seq
DB search
MRLFYCAIVLLWASSAECQQRGLFPAILNLASNAEITTNATCGEPEPEMYCKLVEHVPGR
RIRNSQCRTCNAQSQNPKEQHPITNAIDGTNGWWQSPSIKNGRQFHWVTLTLDLRQIFQV
AYIIIKAANSPRPGNWVLERSMDGVEYTPWQYHAISDTECLTRYNITPRLGPPTYKRDDE
VICTSYYSRLVPLEHGEIHTSLINGRPSADQLTPELLDFTSARYIRLRLQRIRTLNADLM
TLSYRDPKEVDPIVTRRYYYSIKDISVGGMCICYGHAQSCPWDPVAKKLQCVCEHNTCGE
SCNECCPGYHQEPWQPGTLSDGNTCEKCNCHDKANDCYFNQTVANRKMSMNLHGDFHGGG
VCISCTKNTAGVNCETCADGFYRPHKVSPYNENPCVECSCDMRGSLTPACIRDDNHAKPE
KGLNSGQCLCKEGFAGELCDRCAFGYRDFPLCSRCECSLEGSLNIDPCSECICKENVMGA
NCDLCKQGFFNLEVSDPEGCTECFCFGVSDVCESSPWSLSQTVHSNGWLLPTKSVSVYTA
PLTDEDNNLFVPNITMIQSYRFLSTWAAPESFLGKRLTSYGGFLNYSVAYDVSVDNVDKS
LPSQFELIIEGNGRTLRQTPPRQLFLTPLREQHVAVELLPQGFVDLHTGQRVDRVELMTA
LADVAGLRIRGHLNASAEGALRLSNVSLDMVDINSANPVQARDVEQCECPWGYSGISCEY
CMSGFYRVGGILFGGNCLQCECNDHAKECDINGVCLDCTHNTTGPHCDQCLHGYYGDPSE
GTPEDCRRCACPLTVATNNFSPTCVLEGPGQVTCDQCQHGYTGTKCERCANGYHGDPKVA
GQECVVCECNGNVDPWEPGHCDTSSGVCLKCHSHTSGDQCERCEDGYYGDAITAKNCQAC
GCHEKGSYLGVCDLLTGRCTCKPNVVGEKCDQCQVGFHGLLNGQGCRECNCIQSGSVSTA
CEEDGRCQCIPGVAGDKCDRCHHGYFNYQGSGCTQCECAHTHGNCNATTGECICPPYTRG
EKCELCEEGHWGHDTVTGCKSCDCSEAGSSATQCGITNGQCQCRSEFAGQNCDRCAMGYR
GYPECTVCNCNTNGTREEFCDEELGVCSCEAPGNCVCKDNVGGGGCDECKKGTFGLSGSN
PAGCSPCFCFGVSSDCEELGGMVRVLITLGSDPELLRVVSQSDFQGSVEGVYYQTPDMLL
DTREIESTSLAGPYYWRLPKHYQGNKLLSYGGKLSYVVAFHALDGAGLANNEPQVLMRGG
HLRKQVIYIDMPAPDNGVKTRQDVPLTEHKWKYFNSVSEKAVSHSDFMAVLSNIEYITIK
ASYGTRLQQSRISNITMDTALEAEEGLKGMEVACLIETCVCPAGYAGLSCQECAPGYYRQ
PVTELNSGKRPLIQPCVPCRCNNHSQACDLDTGECLSCQHNTAGEHCSVCSSGYYGNVKG
SISDCSLCACPLKENSFSPTCALEGVMGDFRCNACKPGYEGRYCERCAVGYYGNPSASGG
KCEVCQCSTAGSLHTACDSLTGQCECKAGVRGHLCDQCEARHVLDGDQCVSCDDECTRVL
LDDLDAVERSFLSVNLTGVILSPYSTLVNLENDTREVKSLMSTDRSPAYHLTRDEEDLTN
LTQDIDGLLQKATGVSADGDEVARSTENSITQGAELLEYINTIQTAIQALAEEAGRLNRT
DNVEMNEAKSKRLVKQVATMLENIRAFDLAQANASASTELSAAKALLQRVQKDLQQPQGT
LESQTLNISTSLTQHHQQLEGAQALLNTARENNNHTHTLLGSVNTNLGQYQGLKQNVSRL
NQTAETQLEETQDILADAVNLAEDMGNITSQLEGAKHQLEQWNPMLRKHVDALVMELREQ
DVLELVYKAEDHAQELSKKAQALQSSLAEGMNTTLNVTSAAHANSNIRANVQPAEEMANL
ANLTAAMALNMTVQHEESLTDLGSEAVQRSAKILAESLAMNNSTEGLLANISDVTDRMAL
LKNNLHNTSRLIPEPAVLLHSLPNGTSEQVLEAKEQAAMANASLQRALERLEELRVRLEE
SSTAVAQVKTSFSNTNQLFSDSQSTASTAESKLKEAESRTERLYDRLKPLKTLGENLSRN
LSEIREMINRARKQAASIKVSVLADKDCVRAYKPEMSSSNFNTLTMTVKTSEPDNLLFYM
GSSSSVDFMAVEMRHGKVAFLWDVGSGHAKLEYPDVQINNNKWHRINATRFGKHGSLSVH
QLELDPLPAVKTASPGSATVLDVNKFTLIFVGGLGGQIKKSSAVKMTQFKGCMGEASLNE
KNIGLWNYAEREGQCRGCFLSPQTEETSFHFDGSGYSVVEKPLRSTSTSIVLLFKTLSPN
GLLLYLASNSTRDLLSIELVEGQVRLTFELGSGPLTLSSNKAYNTGSWYKITLQRNKRKA
YMSVMAADNSSVKEVMEAESPGTASDLNRADLDPIYIGGLPMSRPIRRQVVARSYVGCIK
NMEIARSNFDLLRDSYGVKKGCVLEPIRSVSVLREGYVELPSMSLGSQGELLASFSTRNH
TGIILAGFSKAGTRKRRQARQPFLAVMLVSGRLEVHINMGEGGSVHKVVVKSRSGSFSDG
QEHSVILQRNRKTMMVLVDEDHQGTVRLSSEKASLTLTSLYMGGLPPEEGAGLLRTTSSF
YGCIRNLALDAKLLDLSAAVKYHNVDMDSCLLEERTKRVLLPDDTDLGAEPTLDAARPPP
PPPTQLSALTPGTLTCASMDNTTSIPEAHQFGISRHSHMVLNINPNTVRRSFSLELSVRT
FAQSGLLYYMAHANQMDYATLQLLGGHLFFTCDKGSGPATASFPVPVNDGQWHTVKTDFN
KKSVVIRVDGQASAPVLAKGNTLDVENKLYLGGLPHTYTAKKIGNVTQSLAGCIQKVMLN
SVKLDTQSPVSEHSTAQCFTTAQDGTFFNGSGYAALMKDGYKVGSDVMVALEFRSTVPDG
VLLGVSSAKVDAIGLELASGQAMFHVNNGAGRVSATSRLGRWLCDGRWHTLLAKKTKNAL
SLSVDGVTVLTDNPHPQSTSAETKDPVYVGGFPVGVKQNCLTSRSPFRGCMRNIRLIKGH
VTDVLDFSTAFTLQGVSPHSCPGPAA
NT seq
9261 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttttctactgtgcaattgtgctgctatgggcatcgtccgcggagtgccagcaa
agaggtctcttccccgccatcctcaacctggccagtaatgcagagatcaccaccaacgcc
acctgtggagagcctgagccagagatgtactgtaagctggtggaacatgtaccaggacga
cgcatccgcaactcccagtgtcgaacatgtaatgcccagagtcaaaaccccaaagagcaa
catccaatcaccaacgccatcgacggcaccaacgggtggtggcaaagccccagcattaaa
aatggccgccagttccactgggtgaccctcacactagatttacgccagattttccaggtg
gcctacatcatcatcaaggcagccaactcccctcgtcctggtaactgggtgctggagcgt
tcaatggacggtgttgagtacacaccctggcagtaccacgccatcagcgacacagaatgt
ctgacccgctacaacatcaccccccgcctcggaccccccacctacaaacgagacgacgag
gtcatctgtacctcttattactcacgcctcgtacccctggagcacggagagatccacacg
tctttgatcaatgggcggcccagcgctgaccaactgaccccagagctgctggacttcacc
tcagcccgctacatccgcctgcgtctgcagaggatccgcacgctcaacgccgacctcatg
accctgagctaccgcgaccccaaggaggtggaccccattgtcaccagacggtactactat
tcaatcaaggacatctcagtgggcgggatgtgtatctgttatggacacgcccagagctgt
ccctgggaccccgttgccaagaagttgcagtgtgtgtgtgagcacaatacctgtggggag
agctgtaatgagtgttgccccggctaccaccaggaaccgtggcaaccgggaaccctctcc
gatggcaacacatgcgagaaatgtaactgccacgacaaggccaacgactgctacttcaac
cagacggtggccaaccgcaagatgagcatgaacttgcatggtgacttccatggcgggggc
gtttgcatcagctgtaccaagaacacggccggtgtcaactgtgagacctgcgcagatggc
ttctacaggccccacaaggtgtcgccgtacaatgagaacccgtgtgtggagtgcagctgt
gacatgagggggtctttgactcctgcttgcatcagagatgacaaccacgccaagcctgag
aaaggtctgaactcaggccagtgtctgtgtaaggagggctttgcgggcgagctctgtgac
cgctgtgcctttggctacagggacttccccctgtgttcacgctgtgagtgcagtctggag
ggcagcctcaacatcgacccatgctcagagtgcatctgcaaggagaacgtgatgggggcc
aactgtgacctgtgtaagcagggtttcttcaacctggaggtcagtgatccagagggctgc
acagagtgtttctgcttcggtgtgtctgacgtgtgtgagagttcaccctggtctttgtct
cagactgtgcactccaatggatggctccttcccaccaaaagcgtatctgtctacacggca
cccctcactgatgaagacaacaacctcttcgtcccaaacatcaccatgatccaatcatac
cgttttctttctacatgggccgccccggagtccttcctggggaaaaggctgacatcgtac
ggagggtttttgaactacagtgtggcgtatgatgtttcagtggacaacgtggacaagtct
ctgccgtcacagttcgaattgattatcgaggggaacgggaggaccctgcgtcagacgccc
cccaggcagctcttcctgacgcccctgcgtgagcagcatgttgctgtggagctcttgcca
cagggcttcgtagacctgcacacgggtcagagggtggacagggtcgagctgatgaccgca
ctggccgacgtggctggactgaggatcagaggtcacctcaatgccagcgcagaaggggca
ctcaggttgagcaatgtatctctggacatggtagacatcaattctgctaacccagtccag
gcccgggacgtggagcagtgtgagtgcccctggggctactcgggcatatcctgtgagtac
tgtatgtctgggttctatcgtgtcgggggcatcctgttcggaggcaactgtctccagtgt
gagtgtaacgaccatgctaaggaatgtgacatcaacggagtgtgtctggactgtactcac
aataccactgggccccactgtgaccaatgcctccacggttactatggcgacccctctgag
ggcaccccggaggactgcaggagatgcgcttgcccgctgacagtggcgacgaacaatttc
agccccacctgtgtcctggagggccctgggcaggtgacatgtgaccagtgccagcatggt
tacactgggactaagtgtgagaggtgtgctaacggttaccacggtgacccgaaggtggcg
ggccaggagtgtgtggtgtgtgagtgtaacggtaacgtggacccctgggagccgggccac
tgtgacaccagcagcggtgtgtgtctgaagtgtcacagccacaccagcggagaccagtgt
gagaggtgcgaagacggctactacggtgacgccatcactgccaagaactgccaggcttgt
ggttgccatgaaaaagggtcgtaccttggagtgtgtgacctccttactggacggtgtacc
tgcaaacccaacgtggtgggtgagaagtgtgaccagtgtcaggtgggcttccacggtctt
ctcaacggacaggggtgcagagaatgtaactgtatccagtcaggatctgtgtccacggcc
tgtgaggaagatgggcggtgccaatgcatcccaggggtggcgggggacaagtgtgaccgc
tgtcaccatggttactttaactaccagggcagcggctgtacacagtgtgagtgtgcccac
acccatggcaactgtaacgcgacgacaggcgagtgtatctgtcctccctacaccagagga
gagaagtgtgagctgtgtgaagaaggtcactggggtcacgacactgtgacaggctgtaag
tcatgtgactgcagtgaggcgggcagctctgccacccagtgtggcatcacaaacgggcag
tgccagtgccgctctgagtttgccgggcagaactgtgaccgctgcgccatgggctacagg
ggctacccagaatgcacggtgtgcaactgcaataccaacggcaccagagaggagttctgt
gatgaggaactgggcgtgtgcagctgtgaggccccagggaactgtgtgtgcaaggacaac
gtgggcggaggtggctgtgatgagtgtaagaagggaaccttcggcctatctggttctaac
ccggccggctgcagcccctgcttctgtttcggggtctcctcagactgtgaggagctgggt
gggatggtccgggtgctgatcacactgggctctgacccagagctgcttcgtgtggtcagt
cagagtgacttccagggcagtgtggagggggtctactaccagaccccagacatgctgctg
gacaccagggagatagagagcaccagcctggctggaccctactactggaggcttcccaaa
cactaccagggaaacaagttgttgtcatacggagggaagctatcctacgtggtggcattc
catgctctggacggggccggcctggccaacaacgagccccaggtcctgatgagggggggt
catctgaggaagcaggtcatctacatagacatgcctgcccccgacaacggggtaaaaacc
cgtcaggacgtcccactgaccgagcacaagtggaagtatttcaactctgtgtcggagaaa
gctgtgagtcactcggacttcatggcggtcctgagcaacatcgagtacatcaccatcaaa
gcctcttacggtacaaggctacagcagagcagaatctccaatatcactatggatacagcc
ctagaggcggaggaggggttgaagggtatggaggtggcatgtctgatcgagacgtgtgtg
tgtccagctggctacgctggactgtcctgccaggagtgtgcccctggctactaccgccaa
ccagtgactgagctgaacagcgggaagagaccgctgatccagccgtgtgtgccctgccgt
tgtaacaaccacagccaggcctgcgacctggacacgggagaatgcctgagctgccaacac
aacacggcaggggagcactgtagcgtgtgttcctcagggtactatgggaacgtgaaaggc
tccatcagtgactgctcgctgtgtgcctgccccctcaaagagaacagcttcagtcctacc
tgtgctctagagggagtgatgggagacttccgctgtaacgcctgcaagcccggctatgag
gggcgctactgtgagaggtgtgcagtgggttactatgggaacccgtcagcttcaggtggg
aagtgtgaggtgtgtcagtgtagtactgcagggtctctccatacagcatgtgactcactg
acgggtcagtgtgaatgtaaggctggggtcaggggacacctgtgtgaccagtgcgaggcg
agacacgtcctggacggggaccagtgtgtctcgtgtgatgatgagtgtaccagggtgctc
ctggatgacctggatgcagtagagcgctccttcctgtctgtcaacctgaccggggtcatc
ctgtccccctacagcacactggtcaacctggagaacgacacgcgagaggtcaagtctctg
atgtctacggataggagcccagcctatcacctgaccagggatgaggaggacttgacaaac
ctcacccaggacatagacggactgctacagaaggctacgggtgtgtctgctgatggagat
gaagtggcccggtccacagagaacagcattacccagggggccgagcttctggagtacatc
aacaccattcagactgccatacaagccctggcggaggaagctggccgtctgaacaggaca
gacaacgtggagatgaacgaggctaagagcaagcggctagtgaagcaggtggcgaccatg
ttggaaaacatcagagcgttcgacttagcccaggccaacgccagcgcctctacagaactc
agtgctgccaaggctctcctccagagggtgcagaaggacctccagcagccccaggggacg
ctagagtcccagaccctcaacatctccaccagtttgacccaacaccaccagcagctagag
ggcgcccaggcccttctgaacacagccagggagaacaacaaccacacacacaccctgctg
gggagcgtcaacaccaatctgggacagtaccagggactgaagcagaatgtgagccggctg
aaccagacagcagaaacccaactggaggagactcaggacatcctggctgatgctgtcaat
ctagcagaggacatgggcaacatcacctctcagctggagggggccaagcaccagctggag
cagtggaaccccatgttgaggaagcatgtggacgctctggtgatggagctgagggagcaa
gacgttctggagctggtctacaaggctgaagaccacgcccaggaactcagcaagaaggcc
caggctctgcagagctctctagcggaggggatgaataccactctgaacgtcaccagtgca
gcgcatgccaattctaacatcagagctaacgtccagcctgcagaggagatggctaaccta
gccaacctgactgctgctatggccctcaatatgactgtccagcatgaggagtcactaact
gatctgggatctgaggctgtgcagcgtagtgctaagatactggctgagagtctggccatg
aacaacagcactgagggtctcctggctaacatcagtgatgtgacagacagaatggccttg
ttgaaaaataacctccataacaccagcagacttattccagagccagcagtcctgctccat
agcctgcccaacggcaccagtgagcaggtgctggaggccaaggagcaggctgccatggcc
aatgcctccctgcagagggcgctggagcgcctggaggagctcagggtcagactggaggag
tccagcacggctgtggcccaggtcaaaaccagcttctccaacaccaaccagctgttctct
gactcacaatccactgccagtacagctgagtctaagctaaaggaggcagagagtcgtaca
gagaggctgtacgaccgtctcaaacccctcaagaccctgggggaaaacctgagcagaaac
ctgtctgagatcagagagatgatcaaccgggcccgcaaacaggctgcctcgatcaaggtg
tcagtgctggcagacaaagactgtgtgagggcctacaagcctgagatgtcctccagtaac
ttcaacactctaactatgaccgtcaagaccagcgagcctgacaacctgctcttctatatg
ggcagcagctccagcgtggacttcatggcggtagagatgcgtcatggcaaggtggcgttc
ttgtgggatgtgggttcaggccacgccaagctggagtaccccgatgtccagatcaacaac
aacaagtggcaccgcatcaatgccacgcgctttgggaagcatggctcactgtcagtccac
cagctggagttagatcccctgcccgcggtgaagaccgcctcacctggctccgctacggtc
ctggatgtcaacaagtttaccctgatatttgttggcggcctgggaggccagatcaagaag
tcctcagcggtgaagatgacccagttcaagggctgtatgggggaggcgtcgctcaacgag
aagaacattgggctgtggaactacgctgagagggagggccagtgtcgcggctgcttcctg
agtccgcagacagaggagacgtccttccactttgatggcagtggctactcagtggtagag
aaacccctccgctccacctccacttccatcgtactgctgttcaagaccctctcccccaac
ggcctgctgctctacctggcctccaacagcacgagggacttactgtccattgagctggtg
gagggccaagtgcgcctgacgtttgaacttggctctggtcctctgaccctctcctccaac
aaagcctacaacactggcagctggtacaagatcaccctgcagaggaacaaacgcaaagcc
tatatgtcggtgatggctgcagacaactcatcagtgaaagaggtcatggaggcggagtct
cctgggaccgcctccgacctcaaccgcgccgacctggacccaatctacattgggggactg
cccatgtctcgacctatcaggagacaagtagtagcacggtcctatgtgggctgcatcaaa
aacatggagattgcccgctccaactttgaccttctccgagactcctatggggtcaagaaa
ggttgtgtgttagagcccatccgcagtgtgtctgtactgagagagggctatgtggagctg
ccatcaatgtctcttggctcccagggggagctgctggcctccttctccacccgcaaccac
actggcatcatcctggcaggcttcagcaaggcaggcacccgcaaacgcagacaggcacgc
cagcccttcctggcggtcatgctggtgtcggggcgcttggaggttcacatcaacatgggg
gagggcgggagcgtccacaaggttgtggtcaaatcacgctctgggagcttcagtgacgga
caggagcactctgtcatcctacagaggaacaggaagacgatgatggtactagtggatgag
gaccaccaggggacggtgcgtctgtcctcggagaaggcttctctgaccctcacctctctg
tacatgggcggcctcccgccagaagagggcgccggactgctgcgaaccacctcctccttc
tacggctgcatcaggaacctggccctggatgccaagttgttggacctgtcagctgcagtg
aagtaccacaacgtggacatggacagctgtctattggaggagaggacaaagagggtcctc
ctacctgatgacactgacctgggggccgagcccaccctggacgccgccagaccccctcca
ccaccccccacccagctcagcgctctcacccccggcacactcacgtgtgcatcgatggac
aacaccacatccatcccagaggcccatcagtttggcatctccagacacagtcacatggtc
ctcaacatcaaccccaacacagtgaggaggagtttctctctggagctgtctgtgcgtacc
tttgcccagagtggtttgctctactacatggcccacgccaaccagatggactacgccact
ctgcagctgttggggggtcatctgttcttcacctgtgataagggcagtggccccgccacc
gcctccttccctgtgccggtcaacgacggccagtggcacacagtgaagacagacttcaat
aagaagagtgtggtgatcagggtagacggccaggcgtcagctccagtgctggctaaaggc
aacactctggatgtggagaacaagctgtacctgggaggactgcctcacacctacaccgcc
aagaagataggcaacgtgacccaaagcttggctggctgcatccagaaggtgatgctgaac
agtgttaagctggacacccagagtccagtgtccgaacactctactgctcagtgcttcact
acagcccaggacgggaccttcttcaatgggagcggatacgctgctctgatgaaagatggg
tacaaggtgggctcagacgtgatggtggcgctggagttccgcagcacggtgcctgatggt
gtcctcctgggggtcagcagcgccaaggtggacgccattggcctggagctggccagcgga
caggccatgttccacgtgaacaacggcgccgggcgggtgtcagccacgtcgcggctgggc
cggtggctctgtgacggccgctggcacaccctgctggccaagaagaccaagaatgctctg
agtctgagcgtggacggggtcacggtgctcaccgacaacccccacccacagtcaacctcg
gccgagaccaaggacccggtctacgtgggaggcttccctgtcggagtgaaacagaactgc
ctgacttccagatcgccattccgtggttgtatgcgtaacatccgcctgatcaagggccac
gtgaccgacgtcctggacttcagtactgcattcaccctccaaggagtgtcaccgcactcc
tgccccggccccgccgcatga
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