Coregonus clupeaformis (lake whitefish): 121549834
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Entry
121549834 CDS
T08357
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1-like isoform X1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121549834
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121549834
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121549834
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121549834
NCBI-ProteinID:
XP_041717685
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Position
2:complement(2685391..2708667)
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AA seq
597 aa
AA seq
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MGKTGKSTVDLNSPTEVKQAVPFEVMETVAPTDGEEKEEVLPDRGSWKGKFDFLLSCVGY
AIGLGNVWRFPYLCGKNGGGAFLIPYFLTLVFAGIPLFLLETSLGQFTSVGGLGVWTKLM
PMMKGVGLASVVLSFWLNIYYIIIIAWALYYLFNSFRADLPWEGCDNPWNTEKCFSNYSL
TDTTNLTSAVTEFWERNMHQLSSGLEEPGEVRWPLAGTLALSWILVYFSIWKGVEWTGKV
VYFSATYPYFMLFILFFRGVTLPGAKEGILFYITPDFNKLLKSEVWLDAATQIFFSYGLG
LGSLIALGSYNSFNNDVYRDSLIVCCINSFTSMFAGFVIFSIVGFMSYITKKPVQELAAS
GPGLAFLAYPQAVTQLPMSSLWAILFFSMLMMLGLDSQFCTVEGFITALMDEFPMVLRKR
KKVFILGVCLISFLIGFSNITQGGLYVFKLFDYYSASGMCLLFLVFFETVSISWFYGADK
FYGDIEEMIGYRPCGWWKLCWKFFTPAICLGVFTFSAIEMTPLTLGKYVYPAWGQGIGWV
MSLSSMVLVPGYVIYMFCTSKGGIKQRWHKMTTSAPWEHAAVTHQNSHTGSVGEAAV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggggaagactggtaagagcaccgtggacctcaactccccgacagaggtcaaacaggca
gtcccattcgaggtcatggagacggtggcgcccacagatggcgaggagaaggaggaagta
ctccctgacaggggctcttggaagggcaagtttgacttcctgttgtcatgcgtgggctat
gccatcggcctggggaatgtctggcggttcccttacctgtgcggcaagaatggaggaggg
gctttcctgatcccgtacttcctcaccctggtgtttgctggcatacctctgttcctgttg
gagacttcactgggccaattcacctcggttggggggttgggggtgtggaccaaactaatg
cctatgatgaaaggggttggtctggcctcagtggtgctctccttctggctcaacatctac
tacattatcatcatcgcctgggccctctactatctcttcaactccttcagagcggatttg
ccatgggagggttgtgataacccctggaacacagagaaatgtttctccaactacagtttg
acagacaccaccaacctcaccagtgctgtcactgagttctgggagcggaacatgcaccag
ctgtccagtggtctggaggagcctggtgaggtgcgctggcccctggctggaactctggcc
ctgtcctggatcctggtctacttctctatctggaaaggagtggagtggacagggaaggtg
gtctatttctccgccacgtacccttacttcatgctgtttatcctgtttttccgtggggtc
actctccctggggccaaggagggcatcctcttctacatcacccccgacttcaacaaactc
ctcaagtctgaggtgtggctggacgctgccactcagatcttcttctcctatggactgggt
ctgggttcgctcatcgccttgggaagttacaactccttcaacaacgatgtatacagggac
tccctcatcgtgtgctgtataaactccttcaccagcatgtttgcgggcttcgtcatcttc
tccattgtgggcttcatgtcgtacatcaccaagaagcctgtccaggagctagctgcctca
ggcccaggcttggcgttcttggcctacccccaggctgtgactcagctgcccatgtcctcc
ctgtgggccatcctgttcttctccatgctgatgatgctggggctggacagccagttctgt
actgtggagggcttcatcacagctctgatggatgagttccccatggtgctgaggaagagg
aagaaggtcttcatccttggcgtctgtctcatctccttcctcatcggcttctccaacatc
acacagggtggtctgtacgtcttcaagctgtttgattactactctgccagcgggatgtgc
ctcctcttccttgtcttctttgaaaccgtctccatttcctggttctatggagctgataag
ttctatggggacattgaagagatgatcggctatcggccctgtggctggtggaaactctgc
tggaagttcttcactccggcaatctgcctgggagtgtttaccttcagtgccattgagatg
acccccctgaccttggggaagtacgtgtacccggcatgggggcaggggattggctgggtc
atgtctctgtcatccatggttctggtgccgggctatgtcatctacatgttctgcacctcc
aagggcggcatcaaacagcgttggcacaagatgaccaccagcgcaccatgggaacatgct
gccgtcacacaccagaattcacacacaggaagtgtgggcgaagccgccgtctaa
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