Coregonus clupeaformis (lake whitefish): 121549835
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Entry
121549835 CDS
T08357
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6 isoform X2
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121549835 (rnf6)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121549835 (rnf6)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121549835 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-RING-like
zf-P11
Prok-RING_4
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
121549835
NCBI-ProteinID:
XP_041717687
LinkDB
All DBs
Position
34:complement(13526178..13531028)
Genome browser
AA seq
723 aa
AA seq
DB search
MVMDPAGGRDELRRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQR
LDGAKERVSSQPRPEPHPQNTEAGEEEGSSATAEPGAEASNGDSLLEWLNTFRRTGNATR
SGQSGNQTWRAVSRTNPNSGEFRFSLEININHEQPEPGEHSDAPDPSELSPVPPPSTASS
ASIRTAPYTPSTRPSPYTPARPSPYPSPRATLGRRAQIRRTRSSTTIPPLTPAPLTTPLF
PPTALRGTAALHLPPPLVPITPPTLQDQISPPQLQPPSGSSSPGEGQEEDCPRVPPQSGP
QVASVGREPRSSRTRSRGRIRRPAAGGGTSSRSSRRRSRSPLQRNPTPNSATLSPSGGSE
NGVSNNGHSAEPGHGTASVSMETGEAVSEPAVLTEPGPEAGEQEGEAHMAGSGGAGGVRR
HPTIMLDLQVRRIRPGENRDRDSIASRTRSRARAAENTVTFESDSGGFRRTISRSERAGI
RTYVSTIRIPLRRISETGLGEPSSTALRSILRQIMTGFGELSSLMETEADSETTEGTPGH
QDPAGPNANTNTTQTYRSHGNESGTVAGGQAGGAETEREGAAGAEEVEGGQGRLGGSGDG
VVPTPDDGRPMSRDTNNLVENGTLPILRLAHFFLLNDEEDEEHSRGLTKEQIDILATRTY
GQASLEGEAGRACSVCINEYAQGNKLRRLPCAHEFHIHCIDRWLSENNTCPICRQPILPV
HQD
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaccctgctggcgggcgagacgagctgcggcgtcaggcagagcgtcttcga
cgggaggaggcgtactatcacttcatcaacgagctgagcgaggaagagtaccgcctcatg
agagacagcaacctgctgggcacacctggtgaagtgacagcggaggagctgcggcagcgc
ctggacggggcaaaggagcgcgtgtcatctcagccccgccctgaaccacacccacagaac
actgaggccggagaggaggaggggagcagcgctactgctgagccgggagcagaggcgtct
aacggcgactcactgctggagtggctgaacaccttccgacgcaccgggaacgccacgcgc
agcggccagagcggcaaccagacgtggcgcgcggtcagccgcaccaaccccaacagcgga
gagttccgcttcagcttggagatcaacatcaaccatgagcagccagagccaggggagcac
agtgatgcccccgacccctcagagctgtcccctgtcccccctccatccacagcctcctca
gcctccatacgcactgccccctacaccccctccactcgcccctcaccctacacccctgcc
cggccctccccctatccctcacctcgagctaccctgggcaggagggctcagatccgccgt
acacgcagtagtaccaccatacctcctctgactcccgcacccctcaccacacccctgttc
ccccctactgctctaaggggtacagcagccctccaccttccaccacccctagtccccatc
accccccctacccttcaggatcaaataagccctccacagctccaacccccaagcgggtct
tcctccccaggggaggggcaggaggaggactgcccccgtgtaccgccccagtctggcccc
caggtggcgtctgtggggcgtgagccgcgcagcagcaggactcgatcccgcggccggatc
cgcaggcctgcagcaggaggtgggacttcctcccggtcgtctaggagacgtagccgctcc
cctcttcagagaaaccccacccctaactcggctaccttgtcccctagtggtgggagtgaa
aatggtgtctctaataatggccactctgccgagcccggccatggaactgcttctgtctcc
atggagaccggtgaggccgtgtcagagccggctgtactaacagagcctggcccagaggca
ggtgagcaggagggagaggcgcatatggccgggtcggggggtgcaggaggggtgcggcgc
caccccaccatcatgctggatctgcaggtgcggcgcatccgaccgggagagaaccgggac
cgggacagcatcgccagccgtacccgttcccgcgcccgcgccgccgagaacactgtcacc
tttgaaagcgacagtgggggcttccggcgcaccatctcccgctcggagcgggccgggatc
cggacctacgtcagcaccatccggatccctctgaggaggatcagtgagacgggcctgggg
gaacccagctccactgccctgcgctccatcctcagacaaatcatgactggcttcggagag
ctcagctccctcatggagacagaggctgactctgagaccaccgagggcacgcccggtcac
caggaccctgcaggacccaatgctaacaccaacaccacacagacctaccgtagccacggt
aacgagagtggaactgtggcgggaggccaggcaggaggggcagagacggagagagagggg
gcggcaggggccgaggaggtagaaggagggcaggggaggttaggcgggagtggcgacggt
gtagtcccaacccccgacgatggtcggccgatgagcagggacacaaacaacctggtagag
aacggcacgctgcccatcctgcggctggcccacttcttcctgctcaacgacgaggaggac
gaggaacactctcgcggcctgaccaaagagcagatcgacatactggccacgcgcacctac
ggccaggccagcctggagggggaggcggggcgcgcctgcagcgtctgtatcaacgagtac
gcccaagggaacaagctgcgccgcctgccctgcgcccacgagttccacattcactgcatc
gaccgctggctctctgaaaacaacacctgccccatctgcaggcagcccatcctccccgtg
caccaggactga
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