Coregonus clupeaformis (lake whitefish): 121549845
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Entry
121549845 CDS
T08357
Symbol
spata13
Name
(RefSeq) uncharacterized protein spata13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121549845 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121549845 (spata13)
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121549845 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
PH
SH3_1
SH3_9
SH3_2
Motif
Other DBs
NCBI-GeneID:
121549845
NCBI-ProteinID:
XP_041717706
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All DBs
Position
34:complement(13812868..13852258)
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AA seq
1343 aa
AA seq
DB search
MRRAGQSDGTPSTSEDSLSYCRGSTSDPDLRPLARTRPLSDLYPLKAHVEMAVPPSLLSG
CGAEVQPMTSDFNSEESRLNGFNTAAWSSPVIGHPEGKPYPSRIMRLFSTQRKCTVPGDS
QGSSRPLSFQGPPSSAAGPQVWPGLSGLAVMGSFKKLRSSVLQGIQNRGTANQDEEYTSA
ANQGGDNGMVTTNQSPRLRCGEGYRVSNGVSVGQPMAGLSPCGSDNEDEEEVVDEEDGLQ
RNTWFSRSIRRAYGAGRITLLDAGQGKRGEGPGLGVSTNQRPGSGSGSVSEVNLHLEESV
NVNVLSRLSKSADNLHLFKGPFRRKVPSPFLSPAPQIDSPGANGGPSIQRTASASSGDLR
ERSQSPGRFRSPLRSKGHMLKLVGSMTDLTVRRKLNPSPVTPLSLLSRLHDDYSRRTPCL
PASDRQRRPSPARTRAAVERKRNSTSVSLEHMPTIHPQPQAEYNPALLPIELQEGPDHVF
VFHSHNEPFTTTSFSLSARAQRSSLFEGERHQEGQGDGWRAWCDSPPLPLGEPCGSHSKH
QPEVNAEGKMEPKQCIWTRPDQDQEEQEVRGHLWGTLDEQGREALLGGKETPPPSATGTP
SLTPTCPPESPTSPMSLMKMGSTETSTSFIPRRRAGRSRPRPISDYAQLVARKYAIPEEE
TELHPKERTTNGTPCQDYKSNGGSQDRDSPENYNMNGDLQCRRRRPTSVIGGVALYSSPG
AEEREDSLPSALSRPPVPSHQVPPYRAVSARFRPSTFSQSTPIGLDHLGRRKLHRVLSAD
AGSECCAAVDGDSVSEEEGSFDELSDVTTYLQPGVELSALSQWISQGQAVYAEALWDHVT
MEEQELAFKAGDVIRVLEAPHKDWWWGMGADREAWFPSSFVRVRVNQEEDSGAESVESCA
LDQEDPHTAPRDTHTHTHSAEHREQMRTNVVKEIMNTERIYIKHLRDICEGYIRQCRKHP
GMFTELQLKTIFSNIEDIYKFQRQFLKDLEKKYNTDQPHLSEIGACFLLQGEGFSIYSEY
CNTHPAACGELQRLMKLGRYKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELL
KYTPKDHSDYGGVSDAYKAMKNVASLINEGKRRLESIDAIAHWQVAILRWEGTDVLERSS
ELIHSGELTRIVRQGNKTQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMDHTSVLQMP
DGRDPELGISLRNALRLRNSSTLETLCYLCCRKPQDRHRWLQAFARERRRVQEDQEIGMK
ISETQRKQAIFNARKSKQGKMKTIGYSGSAPPHHQHQPLHPIHQRHVTVPTSVPQQQVFT
LAEPKRKPSHLWYAVTRHALFRK
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagaagggcggggcagagcgatggaaccccgtccaccagcgaggactctctctcctac
tgccgtggctccacatccgaccctgaccttcgacctctagcccggaccagacccctcagc
gacctttaccccttgaaggctcatgtggagatggcggtgcccccgtccctgctgtctggg
tgtggtgctgaggtacagcccatgacctctgactttaacagtgaagagagtagactgaac
gggttcaacacggccgcctggtccagccctgtgataggccaccctgaggggaagccctac
ccctccaggatcatgaggctcttctctacccagaggaagtgcactgttccaggggacagt
cagggctctagcaggcccctctccttccagggccctccatccagtgccgcgggcccgcag
gtttggccaggtctgtcagggctggccgtcatgggctcctttaagaagctacgctcctca
gtcctccagggcatccagaacagagggacagccaaccaggatgaagagtacacctcagca
gccaaccagggtggagataatgggatggtcacaaccaatcagagtccaagacttaggtgt
ggggagggctatagagtgtccaatggggtgtctgttggccaaccgatggctgggttgagc
ccttgtggttctgacaatgaagatgaggaggaggtagtagatgaggaagatggactgcag
agaaacacatggttctcaaggagtatccggagagcgtacggggcggggcgcatcacactg
ctggacgctgggcaggggaaacgaggggagggtccaggactgggggtttcaaccaatcag
aggccaggttcaggctccggttcagtgtcagaggtgaacctccatttggaggagagtgtg
aatgtgaacgtgctaagcagactgagcaagagtgcagacaacctacacctcttcaagggc
cctttcagacgcaaagtgccctcgcctttcctctctcccgctcctcagatagactcccca
ggggccaatgggggccccagcattcagagaacagccagtgcctcgtccggtgaccttagg
gaacgcagccagagccctggtcgctttaggagtccactgaggtccaagggccacatgttg
aagctagtgggcagtatgactgacctgaccgtgagacgcaagcttaacccatcccccgtg
acccccttgtcactcctcagccgtctccatgatgactactcgcgccgcacgccctgccta
cccgcaagcgaccgccaacgccggccctcgcccgccagaacgagagccgcagtggagagg
aagaggaacagcacttcggtatcactggaacacatgcctaccatccacccccagccccag
gctgagtacaacccagccttgctccccatagaactccaggagggaccagaccatgtgttc
gttttccacagccataatgagcctttcactacaacctcattttccctgagtgctcgtgcc
cagaggagcagcctgtttgagggggaaaggcatcaggagggacagggagatgggtggaga
gcatggtgtgattcccctccactccccctgggggagccctgtgggagccacagcaaacac
cagccagaggtcaatgcagagggcaagatggaaccaaagcagtgcatatggaccagacca
gaccaagatcaggaggagcaggaggtaaggggacatctctggggtacattagacgaacag
ggcagagaggcactattagggggtaaagagacgccccctccttcagccaccggtacccct
tctctcacaccaacatgtcccccagagtctcccacctcacccatgtcactgatgaaaatg
ggttccacagaaacgtccacgtccttcatccccaggcgaagggctggccgatcgaggcct
cggccaatctctgactacgctcagctggtagccaggaagtacgccatccccgaggaggag
actgagctacatcctaaggagaggactacaaatggaactccctgtcaggactacaaaagc
aatggaggctcgcaggacagagacagcccagagaactacaatatgaatggagatctccag
tgccggaggagacggcccacgtctgttattggaggagtggctctgtactcttcacctgga
gctgaggagagagaggacagtctgccttctgccctgtcgcgcccccctgtcccatcccac
caggtgcccccctacagagcggtgtcggccaggttccgcccctcaaccttctcccagagc
acccccatcggactggaccacctcggacgacgcaaactacacagagtcctcagtgcagat
gccggctcagagtgttgtgcagcggtggatggtgacagtgtgagtgaggaggaggggagc
tttgatgagctcagtgatgtcacaacgtacttgcagcctggggtggagctgtctgctctc
agccagtggataagccagggtcaagcggtgtatgcggaggccctgtgggaccatgtgacg
atggaggagcaggagctggcgttcaaggcgggggatgtgatccgggtgctggaggcccct
cacaaggactggtggtggggcatgggggcagacagggaggcctggttcccctctagcttc
gtcagggtgcgtgtgaaccaggaggaggactcaggagcggagagtgtagagagttgtgct
ctggaccaagaggacccacacactgccccccgggacacacacactcacacacacagcgca
gagcaccgcgagcagatgaggactaatgtggtcaaagagatcatgaacactgaacgcatc
tacatcaaacatctccgggacatctgtgagggctatatccgtcagtgtcgtaaacacccg
ggcatgttcactgagctgcagctgaagactatcttcagtaacatcgaggacatctacaag
ttccagagacagttcctcaaagacctggagaagaagtacaacacagaccagcctcacctc
agtgagataggagcctgtttcctcttacagggcgagggcttctccatctactctgagtac
tgtaacacccaccctgcagcgtgtggggagctgcagcgcctcatgaagctgggcaggtac
aagcacttctttgaggcctgccggttgctgcagcagatgattgacatctccatcgccggc
ttcctgctcacgcccgtccagaagatctgcaagtaccccctgcagctgggagagctgctc
aaatacacccccaaagaccacagtgactacggtggagtgagtgacgcgtacaaggcgatg
aagaacgtggcgagcctgatcaacgaggggaaaaggaggctggagagtatcgatgccatc
gctcactggcaggtggctatcctacgctgggagggaacggatgtcctggagcgcagctcg
gagctgatccactctggagaactcacccggatcgtccggcagggcaacaagacgcagcag
cgcagcttcttcctgttcgaccaccagctggtgttctgtaagaaggacgtgctgcgccgc
gacctgctgcactaccgcggccgcctagacatggaccacacatcggtgctgcagatgcca
gacggcagggaccccgagctgggcatctcgctgaggaacgccctgcggctccggaacagc
tccaccctggagaccctgtgttacctctgctgcaggaagccccaggatagacatcgctgg
ctgcaggcctttgccagggagagacggagggtacaggaggaccaggagataggaatgaag
atcagtgaaacacagagaaaacaagcaatcttcaatgcaagaaaatccaaacaagggaaa
atgaagaccataggctactctggctctgccccgccacaccaccagcaccaacccctgcat
ccaattcaccagcgccatgttactgtgccaaccagcgtgcctcagcagcaggtgttcaca
ttggccgagcccaagcgaaagccctcccacctgtggtacgccgtcacccgacacgccttg
ttcaggaagtga
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