Coregonus clupeaformis (lake whitefish): 121549896
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Entry
121549896 CDS
T08357
Symbol
pola1
Name
(RefSeq) DNA polymerase alpha catalytic subunit isoform X1
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121549896 (pola1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121549896 (pola1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121549896 (pola1)
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
121549896 (pola1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DUF1744
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
121549896
NCBI-ProteinID:
XP_041717791
LinkDB
All DBs
Position
34:20187743..20277053
Genome browser
AA seq
1473 aa
AA seq
DB search
MSPVSKPEKDVDNPDGGESERKEDDCGLAVGRSRREKKEKTGRKSALEQLKRAKKGEKVK
YEVEDLTSVYEEVDEEQYSRMVRERQDDDWIIDDDGTGYVEDGREIFDEDLADDVLEKGA
KGKAGAKGADSKKNIKKAAVAKPNSIKNLFMNSNVKKPAEKDVDLSKDDLLGDILQDLHS
ERPSLLTPPVVTLKKKKAPGTPMNPFSIKTQTPKESPSAQGTKVKRPPPGELTPRVPSRP
PTSRPSVLVEKKRVKVEEIEEEEDNSLQFDGVDFDEPMEVGLEQEKEGPVNEEEEPETKP
AIKVEPKAEPQDPVLLRGVLGGSWGQEEGDSEAPVEVQVDTSRLPLVEGPEGELMFRFYW
LDAFEEQYSQPGVVYLFGKVWIESAKAHVSCCVSVKNIERTMHFLPRERKVNPKTGEETD
TPVGMMDVYQEVNNLSEKFKIMKFKSKKVEKSYAFEIADVPTESEYLEVRYSAEYPSLPS
DLKGATFSKVFGTNTSSLEHFLLSRKIKGPCWLDIKTPQLSSVPVSWCKVEAVAMRSDLV
TVVKDLPPPPLTVMSISLKTVQNPKTHHNEIVSLAALVHHRFHLDKAPPRPPYQTHFCVV
SKPNDCIFPYDFMDAVKKKNGKVEIAATERTLLGFFLAKMHKIDPDVVVGHDIFGFDLEV
LLQRITVCKVPHWSKIGRLKRSNMPKLGGRGGFAEKSATCGRLVCDVEISAKELIRCKSY
HLTELAAQVLKTDRATIPAENIKNLYSDSPHLLYLLELTWTDAKLILQIMCELNVLPLAL
QITNIAGNVLSRTLMGGRSERNEYLLLHAFHDKNYIVPDKPSFKKAQQELAEGEEEVDSG
KGKSRRKKAAYAGGLVLDPKVGFYDKFVLLLDFNSLYPSIIQEFNICFTTVQREAHSRRK
KTEEEDPDEIPEVPDPDLEMGILPKEIRKLVERRKQVKQLMKAQDINPDLYLQYDIRQKA
LKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILMHTKDMVQKMNLEVIYGDTDSIMI
NTNSSSLEEVYKLGNKVKAEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPQGDGRY
STKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQNRDVIVENIQRHLLELGEKVANGTI
PLNQYEIHKALTKDPQDYPDKKSLPHVHVALWINSQSGRRVKAGDTVSYIICQDGSTLAA
SQRAYALEQLQKQAGLSLDTQYYLAQQVHPVVGRICEPIEGIDGVLIATWLGLDPSQFRA
QQQAQREEEGDGFLGAPVQLTDEEKYKDCERFTFTCPLCNTDNVYDNVFEGAGMMVEAAM
MRCCNLSCGGRPLDYPTHISNKLLLDIRKHIRKYYSGWLVCEDQACQNRTRRLPISFSRS
GPICPACSRSALRPEYSEKALYTQLCYYRFIFDWEYAFTKILQSDERGRVKKLWKAEMEV
YRKLKDVPDRSLLASGYSEVNLSKLFQAFTTLK
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgtctccagtttctaagccagagaaggacgtggataacccggacgggggtgagtctgaa
cggaaagaggatgactgtggcctggcagtgggtcgttccaggagggagaagaaggagaag
acagggaggaagtcagctctggagcaactcaagagagctaagaagggagagaaggtcaaa
tacgaggtggaggatttgactagtgtgtatgaggaggtggacgaggagcagtactctcgg
atggtgagagagaggcaggacgatgactggatcattgatgatgatggcacaggatatgtg
gaggatgggagagaaatctttgatgaggatttggcagatgatgtgttggagaaaggcgcc
aaaggtaaagcgggcgctaagggagcagactctaagaagaacattaagaaggcagcggtg
gccaaacccaacagtatcaaaaacctcttcatgaacagcaacgtcaagaaacctgctgag
aaagatgtggacctgtccaaagacgacctactgggggacattctacaggacctgcactct
gagaggccgtctctcctgactcctccggtcgtcacgctgaagaagaagaaggcccccgga
actcccatgaaccccttctccatcaaaacccaaacccctaaggagtctccctctgcccag
gggacaaaggtgaaacgccctcctcctggtgagctgactccccgggtgccgtcccgcccc
ccgacctccagaccctccgtcctcgtggagaagaagagagtgaaggtggaagaaattgag
gaggaggaggacaactctctgcagtttgacggggtggactttgacgaacccatggaggtg
gggcttgaacaggaaaaggagggccctgtaaatgaagaggaggagccagagaccaaaccg
gccattaaagtggaacccaaagcagaaccacaggacccggtcctactgaggggcgtgctg
ggggggtcttggggtcaggaggagggggacagtgaggcccctgtggaggtgcaagtcgac
accagccgtctcccattggtcgaggggccagagggagagctcatgttccgcttctattgg
ctagacgccttcgaggagcagtacagccaaccaggtgtggtgtacctatttggtaaggtg
tggatcgagtcggccaaggcccacgtcagctgctgtgtgtcagtgaagaacatcgagagg
accatgcacttcctgccccgcgaacgtaaggtgaacccaaagacaggcgaggagacagac
actccggtggggatgatggacgtctaccaggaggtcaataacctctctgagaagttcaag
atcatgaagttcaagtccaagaaagtggagaagagctacgcctttgagattgctgacgtc
cctacagagtccgagtacctggaagtcagatactctgctgagtatccgtctctgccctcg
gacctcaagggggcgactttctccaaggtgtttggaaccaacacctccagcctggaacac
ttcctcctcagcaggaagatcaaaggaccctgctggctggacatcaaaaccccacagttg
agcagcgtgcctgtgagctggtgtaaggtggaagcggtggcgatgcgtagtgacctggtc
accgtggtcaaagacctgcctcctccacctctcacggtcatgtccatcagcctgaagact
gtacagaaccccaagacacaccacaacgagattgtgtccctggctgccctggtccaccac
aggttccacctggacaaggccccccctcgacccccctaccagacacacttctgtgtggtc
agtaaacccaacgactgtatcttcccatatgacttcatggatgctgtaaagaagaagaat
ggtaaggtggagatagcagccactgagagaactctgctgggattcttcctggccaagatg
cacaagatcgaccctgatgttgtggtgggtcatgatatctttggctttgacctggaagtg
ctcctccagaggatcactgtgtgtaaggtcccccactggtccaagatcggacgcctcaag
aggtccaacatgcccaaactagggggtcgcggtggctttgcagagaagagcgccacctgt
ggtcgtctggtgtgtgacgtggagatctcggccaaggagctgattcgctgtaagagctac
cacctgactgagctggctgctcaggtgctgaagactgatagagccaccatacctgctgag
aacatcaaaaacctctacagtgactccccccacctgttgtacctgttggagttgacgtgg
acggatgccaagctgatcctccagatcatgtgtgagctcaacgtgcttcctctcgccctg
cagatcaccaacatagcaggcaatgtactgtctcgtactctgatggggggtcgttctgag
aggaatgagtatctactgctccatgccttccatgacaagaactacatcgtacctgacaaa
ccctccttcaagaaggcccaacaagaactggcagagggagaggaggaggtggattcgggg
aaaggcaagagtagaagaaagaaagcagcatacgcaggtggactggtactggaccccaaa
gtgggtttctatgataagtttgtgttgctgctggacttcaacagtctgtacccctccatc
atccaggagttcaacatctgcttcaccaccgtacagagagaggcccacagcagacgcaag
aagactgaggaggaggaccctgatgagattccagaggtcccggacccagacctggagatg
ggaattctgcccaaagagatccgcaaactggtggaacgacgtaaacaagtgaaacagctg
atgaaagcacaagacatcaaccctgacctttacctgcagtatgacatccgtcagaaggct
ctgaagctgacagctaacagtatgtatggctgtctgggctttagcttcagccgcttctac
gccaagccactggccgcgctcgtcacacacaagggcagagagatcctgatgcacaccaaa
gacatggttcagaagatgaacctggaagtgatctacggtgacacagactccatcatgatc
aacaccaacagctccagtctggaggaggtctacaaactaggaaacaaggtgaaagctgag
gtgaacaagctctacaagctcctggagattgacatcgacggggtgttcaagtctctgctg
ctgctgaagaagaagaagtacgccgccctggtggtggagccgcagggggacggccgctac
agcaccaagcaggaactcaaggggctggacatcgtaagaagggactggtgtgacctcgcc
aaggagtgtggcaactatgtgattggtcagatcctgtcggaccagaaccgtgatgtcatc
gtggagaacatccagcgtcaccttttggagttgggagagaaggttgctaacggaaccatc
ccactcaaccagtatgagatacacaaggccctgactaaggacccccaggactacccagac
aagaagtctcttcctcacgttcacgtggctctctggatcaactctcagagcggacgaagg
gttaaagctggagacacagtttcctacatcatctgccaggatggctctacgttggcagcc
agtcagagggcctatgcgttggagcagctccagaagcaggccgggctgagcctggacacc
cagtactaccttgcccagcaggtgcaccccgtggtgggcaggatctgtgagcccatcgaa
ggcatcgacggggtcctcatcgctacatggctgggtctggaccccagtcagttccgggcc
cagcagcaggcacagagagaggaggagggagatgggttcctaggagctccggtccaactc
actgatgaggagaaatataaagactgtgaacgcttcacattcacctgccctctctgtaac
actgataacgtctacgacaacgtgtttgagggagcgggtatgatggtggaggcggcgatg
atgcgttgctgcaacctgtcctgtggggggcgtcctctggactatcccacacacatcagc
aacaagctgctactggacatccgcaagcacatcaggaaatactacagcggttggttggtg
tgtgaggaccaagcctgccagaaccggaccaggaggctgcccatctccttctccagatct
ggacccatctgtcctgcctgctcccgctctgcactcagaccagagtactctgagaaagcc
ctgtacacccagctgtgctactacaggttcatcttcgactgggagtacgctttcaccaaa
atactacagagcgacgagagagggagggttaagaaattatggaaggcagagatggaggtc
tacaggaagttaaaagatgttcctgaccgctccctccttgccagtggttactctgaggtc
aacctctccaaactcttccaagccttcactaccctcaagtaa
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