Coregonus clupeaformis (lake whitefish): 121549961
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Entry
121549961 CDS
T08357
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04144
Endocytosis
cclu04520
Adherens junction
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121549961
09144 Cellular community - eukaryotes
04520 Adherens junction
121549961
04530 Tight junction
121549961
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121549961
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121549961
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121549961
NCBI-ProteinID:
XP_045062710
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All DBs
Position
23:57868792..58308234
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AA seq
1217 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGNGNIKVHSLIEQAAMRYKKAIAKDPGYWLQVHRLEHGDGGILD
LDDTLCDVADDKDRLVAVYEEQDPHHGGDGTSASSTGTQSPDPFTAVAELNSSNMSAFQP
YQTSSEIEVTPSALRSNMPLHVRRSSDPTLAGLPLGDPQTAPEEPSRKNPTRWSTTAGFR
KHNHHHNHSQNTGTNSLERKGKAVDTCRSLPRDTAAWATQFQRETARSSLSANHPMVDRW
LDRQDQEEAEEEERVKEEERNGRIEPVGRADSCVEHFPKLSLDDMLKLVEVSNVGGPLGI
HVVPFSATDRRTLGLLVKRLEHGGKAEQEGLFEENDCVVKINNGDLRSIRFEQAQNMFRQ
AMRSPVILFHVVPASMKSQYEQLSQGELSPPCPRGERGNRESFSSSQASDPQAPQPGERG
SLVVQGGMGLEHTPQRMSSRSRPHPIPIPSPKHQNHCPLPQRVPDHHFSTSLPHSGSNNV
SSAPSPSLQRRVSANPTAGYFKKTGRRLNIQLKKGPEGLGFSITSRDVPIGGSAPIYVKN
ILARGAAIQDGRLKAGDRLQEVNGVDLNGRTQEEVVALLRVTPMGGTVSLLVVRQEDSYL
PREVKSEEEDLVLTPDGTREFLTFEIPLSDSGSAGLGVSVKGNRSKENHADLGIFVKSII
NGGAACKDGRLRVNDQLIAVNGESLLGTPNQDAMETLRLSMSTEGNKRGTIQLIVARRVA
KSNEEAPGSSPVQEQPLTDPLDDHERHISHSMYGTIEGMDDQPSMPPRNVMMGPRMMGNY
QLSPTVNMPQDDTVMIEDDRPPVVPAHLSDQSSSSSHDDVGFAADNPVTWAQDMSNQNEC
SLSPDTEDPEDSFQREGFGRQSMSEKRTKQFGDNANQLEIIKTRKSKSMDLVSDEVNPHL
TPSTENMEGSSTGEAVGPSLGLKKSSSLESLQTAVAEVTLNGEMNLHRPRPRIIRGRGCN
ESFRAAIDKSYDRPGVIVTAKEECDPKGMETLEEDPEGSSRSGRDSMSTSTDLTLPPGNA
VTMERQVNGNGTATKDDQKREKSVRDKKKPERDKEKEKEKEKNKAKKGLLLKGLGDMFRF
GKNRNGDKMERKGSNKSKMEDTQASEEEMLRMKLEQERIQAKTREFRERQASVAREREYA
EILDINPNLNCTFSSNEDEEHPYAGIGSLDGSSLDSRQDPHQGSQPSQDSGPDQPDLEAL
YAQVNKPRNGHPPSADR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacagtgtgttttgggagaaccagggtggtggttccttgtggcaatggaaat
attaaagttcacagtcttatcgaacaagccgccatgaggtataaaaaggctattgcgaag
gatcctggctactggctacaggtgcacaggttggagcatggggacggaggcatactggac
ctggacgacacgctgtgtgatgtggccgatgacaaagacaggctggtggcagtgtacgag
gagcaggaccctcaccatggtggcgatggcaccagtgccagctcaacgggcacacagagt
cctgaccccttcactgccgtcgcagagctcaactccagcaacatgtccgccttccagccc
taccagaccagcagcgagatagaggtcaccccctccgccctgcgcagcaacatgcctctc
catgtccggcgcagtagcgacccaactctggcaggccttcccctgggtgacccacagaca
gcaccggaggaaccatcccgtaagaaccctacacgatggtccaccacggcaggctttcgc
aagcacaaccaccaccacaaccacagccaaaacactgggaccaacagcctggaacgcaag
ggtaaggcagtggatacgtgccggagtctccctcgtgatacagcagcctgggccacccag
ttccagagagagactgcccgctcctctctcagtgccaaccaccccatggtggaccgctgg
ctggacagacaggatcaggaggaggcggaggaagaggagagagtgaaggaggaagagagg
aatgggaggatagagccggtggggagagcagactcctgtgtggaacacttcccaaagtta
tctctggatgacatgctaaagctggtagaggtgtccaatgtcggcgggcctctggggatc
cacgttgtgcctttcagtgccacggacagaaggaccctggggttgttagtgaagcgtctg
gagcacgggggcaaggcggagcaggaaggtctgttcgaggagaacgactgtgtcgtcaag
attaataatggggatctgaggagcatccgatttgaacaagcacagaacatgttcaggcag
gccatgcgttctcctgtcattctgttccacgtggtcccggcctccatgaagagccagtat
gagcagctctcccagggggagctcagccccccatgtccgaggggggagaggggtaaccgg
gaaagcttcagctccagccaggcctcggacccccaggccccgcagcccggggaaaggggt
agtctggtggtccagggggggatggggttggaacacaccccacagaggatgtcctcccgg
tcaagaccacaccccattcccatccccagccccaaacaccagaaccattgtcctctacca
cagcgtgtaccagaccaccacttctccacctcgttacctcacagcggaagcaacaacgtg
tcctcggccccctctccatccctgcaaaggagagtcagtgccaaccctaccgcaggctac
ttcaagaagacaggccggagacttaacatccagctgaagaaaggtcctgagggtcttgga
ttcagtatcacgtcacgtgacgtccccataggaggctctgcccccatctatgtcaagaac
atcctagctcggggcgctgcgatccaagatggccgcctgaaggctggcgaccggctgcag
gaggtgaatggggtagacctgaatgggaggactcaggaggaggtggtagctctactcagg
gtcacccccatgggaggaacagttagtctgctagtcgtacgccaagaggactcctatcta
cctagagaagtgaagtcagaagaagaggacctggttttgaccccagatggtaccagggag
ttcctgacctttgagatccccctgagtgactcggggtcggcaggtctgggggtcagcgtc
aagggcaaccgctccaaggaaaatcacgccgacctgggcatcttcgtcaagtccatcatc
aatggaggagccgcctgcaaggatggccgactgagagtcaacgaccagctcattgccgtc
aatggcgagtcgttgctagggacgcccaaccaggatgccatggaaacgcttcgcctgtcc
atgtcgacggagggcaacaaacgagggacgatccaactcatcgttgccaggagggttgcc
aagagcaacgaggaggctccaggaagctcaccggtgcaggagcagcctctgacagaccct
ctggatgaccatgagcgccacatttcccactccatgtatgggaccatagagggcatggac
gaccagccctccatgccaccacgcaatgtcatgatgggaccgcgcatgatgggtaactac
cagctgtctccgactgtgaacatgccccaggacgacaccgtcatgatcgaagatgatcgg
ccacctgtggtccccgcccacctgtctgaccaatcatcctccagctcccacgatgacgtg
ggctttgctgcagataacccggtgacttgggcccaggacatgtcaaaccaaaacgagtgc
tccctcagtccggacacagaagacccagaagattcctttcagagagaggggtttggacgc
cagagcatgtcagagaaacgcaccaaacagtttggtgacaatgccaatcagcttgagatc
atcaagacgcgcaagtccaagagcatggacctagtatctgacgaggttaacccccacctc
acccccagcacagaaaacatggaaggctcttcgacaggagaagcagtaggtccctctctg
ggcctcaagaagtccagctccctggagagcctccagactgctgttgccgaggttacactc
aacggggaaatgaacctccacaggccacgcccacgtatcatcagggggcggggctgcaac
gagagcttccgggcagccattgacaaatcatacgacaggccaggagtgatcgttactgct
aaggaagagtgtgacccgaagggaatggagacattggaggaggaccccgaggggagttct
aggtcgggccgagactccatgtccacatccacagacctgaccctgccacccggcaacgcc
gtaacgatggagagacaggtgaatggcaacggcaccgccaccaaagacgatcaaaagagg
gagaagagcgtgagggacaagaagaagcctgagagagataaagaaaaggagaaagaaaaa
gagaaaaacaaagccaagaaagggttgctgctgaagggcctgggagatatgttcaggttt
gggaagaaccgcaatggagacaagatggagcgtaaggggtcgaataaatctaagatggag
gacacacaggcgtctgaggaggagatgctgcggatgaaactggagcaggagaggatccag
gcgaagacgagggagttccgtgaacgtcaggcatcggtggcgagggagagggagtatgct
gagatcctggacatcaaccccaacctgaactgcaccttcagctccaacgaggacgaggag
cacccctatgcaggcatcggctccctggacgggtcatccttagacagcagacaggatccc
caccaagggtcccagccctcccaggacagcggtccagaccagcccgacctggaggccctc
tatgcccaggtcaacaagcctcgcaacggacaccctccctcagctgacaggtaa
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integrated database retrieval system
