Coregonus clupeaformis (lake whitefish): 121550048
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Entry
121550048 CDS
T08357
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121550048
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Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
LRR_14
PDZ_6
LRR_4
PDZ_2
LRR_9
LRR_LRWD1
AbLIM_anchor
Motif
Other DBs
NCBI-GeneID:
121550048
NCBI-ProteinID:
XP_041718067
LinkDB
All DBs
Position
34:34003596..34122637
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AA seq
2057 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELDVLPDTLGALPNLRELWLDRNQLSSLPLELGNLRRLVCLDVSENRLEELPSELS
GLLALTDLLLTQNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNVDRNRLGGVPDELGGCASLNVLSLRDNRVAKLPAELADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDDDSTGEKVLTCYLLPQQP
SPSLENLLQNSVDDSWIDSNLNRVSVIQFQEETTKQDEDDEAAAERRGLQRRATPHPSEL
KVMKKVIEERRNEPYISRPDGETESPGTEEKRLSNLSNQSHDSAASNSTASANSHEERRC
LMTTAGESLVGGHGEQEEEEELDEMEVEYVEPTVHFAEEPIYQGGDEDGEDEEGEDGVPC
SDVEEQRPQFPTEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDAHLAQHPTSH
HPDPEEEEEEEEEEEEEEEEECMVTPQRHNRIEEPELEDRSLLHVNSSLQPVKGVSFDQV
NNLLIEPARIEEEEHTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAGQA
GVKVGDKLLEVNGVALQGAEHHTAVEALRSSGATVSMSILREHMVEPENAITTTPLRPED
DYFPRERRASGLPFCIEAGSPAGPRHRLSTCLVRNDKGLGFSIAGGKGSTAYRTGDMGIY
ISRIAEGGAAHRDRMLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEP
GTAGGSPGLSRARAHSPPPPEPSDSPDQEEGNDDSSLLPHGNHLSQPLEDEYPIEEVALV
KAGGPLGLSIVGGSDHASHPFGINEPGVFISKVIPHGLACQSGLRVGDRILEVNTIDLRH
ATHQEAVRALLSNKQEIRMLVRRDPSPPGMEDIVIQKQPGEKLGISIRGGAKGHAGNPFD
ATDEGIFISKVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLVILV
CDGFDPGNAAAIEASPGIIANPFAAGIVRKNSMESISSIDRDLSPEEMDILQKEVVRETS
QWESEEMEEVERMRLEREEDTRLLEEETENLGTGPLKLDYRTLAALPTTALQKVNRLSPS
VSATVPTEAPMQAQCSFPLEPLGFGLGQPPTSLFHVDPHALPQSCPTMNTEAEPLYMSQH
SPSPSITSSNQEAARQEALPTGEDEEEVVLVDSQPINFTENPFLVANRRSKGLPPSERIL
SGPHVGYGSAGKLQPWLFSKAPSTEPPRTDSPIRDAPYSPSTQPPSAHSSTSSLCAGRET
RFASIHFTPTALPAKENNSPYETRPGAIQPLSRGGGRQITSPATPDGHSRDGHSSPNPFQ
HGPSPINSQSFDQFGQRNNVHPNQPSPSPEPELNNEVFEDEVEGDGGVGRGQAAPVSPRP
SLSSDRRDYMSLAAVPRLSRASMDMVVKTPSPGGRDSLEQRSFRDRQKYFEIDVKQQTPD
SKPKGRVSLVGADDLKKMREEEERRFEQRAREYLMDDDDEEEDDLVTQMGVLKATGKVLL
DGVEYKVEPVATPPRHCNTPPSYCGSSGPSLVDGKGDSQRNSLEESFRLEQQRPNSMTGL
IPVYPGESGAPIRTAKAERRQQERLRMHSPELTPAGDKDLSPSEKRALEAEKRAMWRAAR
PYGLEEDVRQYEQDLAKRLYQSRVRASQGTAPPPQSQNAATSSAASQLRMKSLEQDALKA
QMVIAKSREGKKRGTMDQLAESPSPAPTPSPTPLEDFSPQGVTSPGRLSLSEKKFDYRQF
AAIPSSKPVYDIQSPDVVDDIQFIDDGSSNPVRAADPGTEVPAALPTATSALEEMALYSN
KRKLRQGRRSLETAVPT
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgctgtaaccgccacgttgagtcggtggacaagcga
cattgtaatttgcaaaatgtccccgacgagatattccgctacagccgtagtctggaggag
cttctcctcgacgccaaccaactccgagaactacccaagcctttcttcagacttctgaac
ctgcggaagctgggtctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgatatttccagaaacgacattcccgagatccccgagagc
attaagttctgcaaggcattggagattgcagacttcagtggaaaccccctctccaggttg
cctgatggtttcactcagctcagagggctcgcccacctggcactcaatgacgtgtcgttg
cagacactgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcactctctttcctggtgaaactggaacaactggac
ctgggcagcaatgaactggatgtgttgccggacacacttggtgctctccctaacctacgg
gagctgtggttggaccgcaaccagctctcctcgttgccactagagctggggaacctgcgg
aggctggtgtgtctggacgtttcggagaaccgcctagaggagttgccctcagagctcagc
ggcctgctggccctcactgacctgctgctcacacagaacctcctggaggtggtccctgac
agcataggctctctgaagcagctgtccatcctgaaagtggaccagaaccgactgacccac
ctgagtgactccataggagagtgtgagaacctgacggaactcgtactgaccgagaacctc
ttacagactctgcctcgctcgctgggcaaactgaagaagctgaccaacctgaatgtggac
cgcaaccggctgggcggcgtgcctgatgagctgggcggttgtgccagcctcaacgtgctc
tccctcagagacaaccgcgtggccaaactgcccgccgagctggctgacgccaccgagctc
cacgttctggacgtggcagggaacaggttacagaacctgccgtttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggacgacgacagcaccggggagaaggtgctcacctgctacctgctgccccagcagccc
tcccccagcctggagaacctgctgcagaacagtgtggacgatagctggatagacagcaac
ctgaaccgtgtgtcagttatccagttccaggaggagaccaccaagcaggacgaggacgat
gaggcggctgcagagcgcaggggtctccagcgccgggcaactccccaccccagtgagctg
aaggtgatgaagaaggtgattgaggagaggaggaacgagccctacatatcaaggcctgat
ggagagacggagtctcctggtactgaggagaagcgtctgagcaatctgtccaatcagagc
cacgactctgcggcgtccaacagcacggcctctgccaactctcacgaggagaggcggtgt
ctgatgaccacagcgggtgagagcctagtgggtgggcatggcgaacaggaggaggaggag
gagctagacgagatggaggtggagtatgtagagcccacggtgcactttgcagaggagccc
atctaccagggtggggatgaggacggtgaggatgaggagggtgaggatggggtcccatgc
agcgacgtagaggaacagaggccccagttccccacggagaagcagcgtctgatcaggaag
gacacgccgcactacaagaagcacttcaagatcaccaagctgcccaaacctgaggcggtg
gccgcgttactgcagggcttcagccccgacgcacacctggcccaacaccccacctcgcac
caccctgaccccgaggaggaggaggaggaggaggaggaagaagaagaggaagaggaggag
gagtgtatggttactccacagcgccacaacaggatagaagagccagagctggaggatagg
agtctgcttcatgtcaactcttccctgcagccggtcaagggggtgtcatttgatcaagtc
aataatctgctgattgagcctgctcgaattgaggaggaagagcacaccctgaccattcta
cggcaaactgggggcctgggcatcagcatagccggaggaaagggatccacaccctacaag
ggggatgatgagggaattttcatctccagggtgtctgaagagggccctgcaggccaggct
ggggtcaaggtgggagacaaactcctagaggtgaacggtgtggctctccagggggcggag
caccacacggcggtagaggccctgcgcagctcaggcgctaccgtctccatgagcatcctc
cgggagcacatggtggagccggagaacgcaatcaccaccacaccgctgaggcccgaggac
gactacttcccccgggagagacgggcaagcggccttcccttttgcattgaggcaggctcc
cccgcaggcccccgacacaggctgtctacctgcctggtccgcaacgacaagggtctgggc
ttcagcattgccgggggcaaaggctccacagcctaccgcacaggggacatggggatctac
atctcgcggatcgctgagggaggggcggcccacagagaccgcatgctccgagtaggggac
agggtcatcaccatcaatggtgtagacatgacagaggccaggcatgaccaggcagtagcg
ctgcttaccggcacctctcccaccatcgctctcctggtggagcgtgaccaggccgagccg
ggcaccgcagggggctccccgggcctgtcccgcgcccgcgcccactcccccccacctcca
gagccctctgactcgcccgaccaggaagagggcaatgacgactcgagcctcttgccccac
gggaaccacctcagccagccgctggaggacgaataccccatcgaggaagtggcgttggtg
aaagcgggcggccccctgggactgagcatcgtgggaggcagtgatcacgccagtcacccg
ttcggcatcaacgagcctggcgtcttcatctctaaggtgatcccccatggcttggcgtgt
cagagtgggctgcgggtgggggacaggatactggaggtgaacaccatcgacctgcgccac
gccacccaccaggaggctgttagagccctgctctccaacaagcaggagatccgcatgctg
gtgcgcagggacccctcaccgcctgggatggaggatatagttatccagaagcagcctgga
gaaaagctgggcatcagcatccgcggcggtgccaagggccacgctggcaaccccttcgac
gccaccgatgagggcatcttcatatccaaggtgagctccagcggtgcggctgccagggat
ggccgtctgctagtgggcatgcggatcttggaggtgagcaaccacagcctgctgggcatg
acccacacggaggctgtacgggtgctccgcgccgtgggagacaccctggtcattctggtg
tgtgacggcttcgaccctggcaacgctgccgctatagaggcgtcgccgggcatcattgcc
aacccgtttgcagcgggcatcgtgcgtaagaacagcatggagagcatctcctctatagac
cgagacctgagtcctgaggagatggacatcctacagaaggaggtggtgcgagagacgtcc
cagtgggagagcgaagagatggaggaggtggagcgcatgcgcttggagcgtgaggaggat
actcgcctgctagaagaggagaccgagaacctgggcactgggcctctgaaactggactac
cggacactggccgcactgcccaccaccgctctgcagaaggtcaacagattatctccttct
gtcagtgcaactgtccccacggaggcccccatgcaggcccaatgttctttccccttagag
cccctgggttttggcctggggcagccccccacctccctctttcatgtggacccccatgct
ctgcctcagtcctgccccactatgaacacagaggcagagcccctctacatgtcccagcac
tctcccagtccctccataacctcctccaatcaagaagcagctagacaagaagccctgcct
accggtgaagatgaggaggaggtggttctggtggactcccagccaatcaacttcactgag
aaccccttcctggtggccaatcgcaggagcaagggcctccccccctcggagcgcatccta
tcagggcctcacgtgggctacgggagcgcgggcaagctgcagccctggttattcagcaag
gcgccctccactgagccccccaggacagacagtcccattagagatgccccgtactcacct
agcacacaaccgcccagtgctcattcctccaccagctccctgtgtgcaggcagggagacc
cgcttcgcaagcattcatttcacccctactgcactgcctgccaaggagaataactcaccc
tatgagacaaggccaggtgccatccagcccctctcccgtggtggcgggcggcagatcacc
tcgccagccactccggatgggcacagcagagacgggcacagcagtcccaaccccttccag
catggcccctcccccatcaactctcagtcctttgatcagtttggccagaggaacaatgtc
caccccaatcagccttctccttctccagagcctgagctgaacaacgaggtgtttgaggat
gaggtagagggggacggaggagtgggtagaggtcaggcagccccagtctctccccgaccc
tccctctcctctgaccgtcgggactatatgagtctggcagcagtgccacgcctctccaga
gcctccatggacatggtcgtaaagactccatcacctgggggcagagacagcctggagcag
cgctccttcagggacagacagaagtactttgagatcgacgtgaagcaacagacgcccgac
agcaagcccaaaggccgcgtgtccctggtgggagcagacgacctgaagaagatgagggag
gaggaagagaggagattcgagcagcgggcacgggagtacctgatggatgacgatgacgag
gaggaggatgacctggtgacgcagatgggagtgttgaaggccacgggcaaggtgttgctg
gacggggtggagtacaaggtggagcctgtagccacgccccccaggcactgtaacacgccc
cccagctactgtggcagctcaggaccctcgttagtggatggtaaaggagactcccagagg
aattccctagaggagagcttcaggttggagcagcagaggcccaactccatgactggtctg
atcccagtgtaccctggagagtcgggggctcccatccggacggccaaggcagagcggagg
caacaggagcggctgagaatgcatagtccagagctgaccccagccggagacaaggacctc
tccccctccgagaaacgggctctggaagccgagaagagagccatgtggagggcagcaagg
ccctatggcctagaggaggatgttaggcagtatgagcaggacctggctaagaggctctac
cagtcgcgagtgagggcgtctcagggcaccgcgccaccccctcagtcccaaaacgctgcc
acctcctccgctgcctcccagctcaggatgaagtctctggagcaggatgcgttgaaggct
cagatggtcatcgctaagtcccgggagggaaagaagcgtgggacaatggaccagctggcc
gagtcgccctcgcccgcccccacgccatcccccacccctctggaagatttcagtccacaa
ggagtgacgtcaccaggcagactgtccctgtcggaaaagaagtttgactaccgacagttt
gctgccattccttcttccaaacccgtatacgacattcagtcccctgacgtggtggatgac
attcagttcattgacgatggctccagtaacccagtgcgcgctgcggatcccgggactgag
gtgcccgctgcactgcccactgccacctcggcgctggaggagatggccctctacagcaac
aagcgcaagctgaggcagggccgccgcagcctggagaccgccgtgcccacataa
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