Coregonus clupeaformis (lake whitefish): 121550052
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Entry
121550052 CDS
T08357
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121550052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121550052
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121550052
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121550052
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121550052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
121550052
NCBI-ProteinID:
XP_041718089
LinkDB
All DBs
Position
34:complement(34331921..34373645)
Genome browser
AA seq
1536 aa
AA seq
DB search
MSKGAREGFVVKFVEVNGRKTDLAVKAYEAIMELQSEKYLKTIDEEEALQLDHNDKSLFV
FSSFATPAFHHCKKLGCRVVSPLVVLFCLQQQRCVPKAEEPVYNMAMADVTISCTSLDKV
ARANVMDLVQLMGGRVYRDLNMSVTHLVAGEVGSKKYLVAASLGKPILLPTWVKTCWEKS
QDSLFRHTELPIEDYVCPVLLGCTICVTGLSTVERKEVQRLCQQHGASYTGQLKMNECTH
LIVSKPSGQKYECAQKWNVFCVSLHWLFDSIEKGFCHDESRYTVEREPQKAGRPHTSTPT
VTSKKKAESLLGLSHISVNTSMTVNDTAMTNATVSRLDTPDPIDALDSTVCPTDDLLDGC
KLHLCGLPGKRMEKLSRLVNMAGGLRLNQPSEDLTHVVMGDQDQDTKTFLAKATHRPHVV
TVQWLLDSFSRGSLLPEGDYHHPACLPPAPAAMAMLAPRTSASHPSSTSSAATPEPATPR
HRKAEEDMLSQYMDDDPREVEMPPPADSSSHRRQSAAALEPWVSAPNQSTTAAGGGAGSD
STLQEASEAGLFAGKQFLLVGFEAEMEAQHSMLVTENCGKVLVQHTRAVADYAVVPLLGC
VVEATVDEVVTDTWLAMCVEQQCVLELGSHPLFSPVPVMEGCSPLRDCVLSVSQFTGAER
ESLVELAKHLGASVQDYFVRMANQRKGMLASTHLVLQIPEGTKYQASQKWGLPAVTLLWV
LDSARTGRRAEEGRYLVNLPPTPEREDESFVGGSQKPSMLPPPSRIKSPEIPLLGPQRGA
AVTPLDMGRFQSKVFRSVLEQGPPEKDCTTPRGQEGGKKSGGQKDSSALQVDTPSRFLCR
DQLFRPTFNVKDALAVLDTPGGRTQQGQTTTPLSEVIGRNLKVALANSTRSHTPDLQALT
ASPQLSKETHREVEEKEAAPLAGVVICVSKKLSKKQGELNAIAASLGADFRWSCDDTVTH
YIYQGRVGDNTREYRAVKERGVHVVSQHWLHACAEDQRHVSESLYPFTYNPKMSLNLSQV
PPDSSQRSPPATRTSQLGDLTEAQKNKPEDTTTSHRISEGETDTEQGQDNTERRDLSETL
EMRKNLQRQLQEIMSATKMATGRRSSARLTRLCSGGSDSQPHTPDRQARMGRNATGRRTL
EALRMSRQAAMDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAVPLAA
SLSHSDHAGNTLRDSMTDSELVEMAVCDVIDQQMGQRVMTPPVEEPEPDLLTTKAPSIAF
PLTNSPVPPEPKTKEESEAKKEPPRFQLSSLNPQERIDYSALIDELGGVVLDKQCFDPSC
SHIIVGTPLRNEKYLAAMAAGKWILHCSYLEACRSVGHFIQEDEYEWGSSSILNALLSIS
SQQKRLALAAMRWRRNLQDRNNQEGSFSGWTVMLNMDRTRESGFRRLLQSGGAKVLPSPS
PSLYKGTTHLFAEFSRLKPGDFRVDVPEAMSQGVKCLKPEFIADYLMQEPTPPIEMYYLP
EAAQCLPAATDASGATPSRKRKASGDSSKLKKTRLK
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggagctagagaaggcttcgttgtgaagtttgtagaagtcaatggacgaaag
acggaccttgctgtcaaggcctatgaggccatcatggagctccagtctgagaagtacttg
aagaccatcgatgaggaggaggcattacagctggaccacaatgacaagtctttgttcgtc
ttcagtagcttcgccaccccagccttccaccactgtaaaaagctgggctgtcgagtggtg
agtccactagtggtgctcttctgcctgcagcagcaacgctgtgtacccaaagcagaggag
cccgtctacaacatggccatggctgatgtcaccatctcctgcaccagtctggacaaggtg
gctagggctaatgtgatggatctggtgcagctgatgggagggagggtctaccgggacctc
aacatgtcagtcactcacctggtcgccggggaggttggcagcaagaagtacctggtggct
gctagcctggggaagcccatcttactgcccacctgggtcaaaacctgctgggagaaatca
caggacagcctgttcagacacactgaactgcccatagaggactatgtgtgccctgtgctc
ctcggctgcaccatctgtgtcacaggcctctccacggtggagcgtaaggaggtgcagagg
ctctgccagcagcacggtgccagctacacaggacagctcaagatgaacgagtgcacccac
ctcatcgtcagcaagccctcgggtcaaaagtacgagtgtgcacagaagtggaatgtcttc
tgtgtatctctgcactggctgtttgacagcatcgagaagggcttctgccacgacgagagc
cgctacaccgtggagcgagaacctcagaaggccggccgaccccatacctccacccccacc
gtcaccagcaagaagaaagcggagtccctgctggggttgagccacatctctgtgaacacc
agcatgacggtgaatgacacggccatgaccaatgccacggtcagccgtctggacacacca
gatcccattgacgctctggacagcacagtctgccccacagatgacctgctggacggctgc
aagttgcacctgtgtggtctgccagggaagcggatggagaagctgagtcggctggtcaac
atggccgggggcctgcgcttaaaccagcccagcgaggacctcacccacgtggtcatggga
gaccaagaccaggacaccaagaccttcctggccaaagccacacacaggcctcatgtggtg
acggtgcagtggctgctggacagcttctccagaggcagcctgctccccgagggggactac
caccacccggcctgtctgcctcctgcccctgcagccatggccatgcttgccccccgcacc
tccgcctcccacccctcttccacctcctcagccgctacccccgaacccgctaccccccga
cacaggaaggctgaagaggacatgctctctcagtacatggatgatgacccgagagaggtg
gagatgcctcctccagctgacagtagcagccacagaaggcagagtgctgcagcactggag
ccctgggtctcagccccaaaccagtctactactgcagccgggggtggggccggttctgac
tccaccctgcaggaggccagcgaggcgggcctgtttgcgggaaaacaattcctcctggtg
ggcttcgaggctgagatggaggcccagcactccatgctggtgacggagaactgtgggaaa
gtgctggtgcagcacacacgggcggtggccgactacgctgtggtgcccctgctgggctgt
gtggtggaggccactgtggacgaggtggtcactgatacctggctggccatgtgtgtggag
cagcagtgtgtgttagagctgggctcccacccccttttcagccctgtgccagtgatggag
ggctgctccccgctcagagactgtgtcctctcagtcagccagttcaccggggcggagagg
gagtccctggtagagctggccaaacacctgggagccagtgtccaggactactttgtgcgc
atggccaaccagaggaagggcatgctggccagtacccacctagtgctgcagatccccgag
ggcaccaagtaccaggcgtcccagaagtgggggctgcctgccgtcaccctgctctgggtg
ctggattctgccaggacgggccggagggcagaggagggtcgctacctggtgaacttgcct
cctactccagagagagaagacgagagttttgtggggggctcccagaagccgtccatgctc
cctcccccgtcccgtatcaagtccccagagatccccctgctgggcccccagaggggggcg
gccgtcacccccctggacatgggccgcttccagagtaaagtgttccgctccgtgctggaa
caaggcccgccagaaaaggactgtaccaccccgagaggccaggaggggggcaagaaatca
ggggggcagaaagactcctcggcgctgcaggtggacaccccctcccgcttcctttgtcga
gaccagctcttcagacccaccttcaacgtcaaggatgcgttagcggtgttggacacgcca
gggggcaggactcagcagggtcagaccacgaccccgctgtccgaggtcatcgggaggaac
ctgaaggtggccctggccaacagcacccgcagtcacacccctgacctccaggctctaaca
gctagcccccagctcagcaaggagacacacagagaggtggaggagaaggaagctgctccc
ctggctggcgtggtgatctgtgtgagtaagaaacttagtaagaagcagggagagctcaac
gccatcgctgcctcactgggagctgacttcaggtggtcgtgtgacgacacggtgactcac
tacatctaccagggtcgtgtgggggacaacacgcgggagtacagggctgtgaaggagaga
ggggtgcatgtggtgtcccagcactggctgcatgcgtgtgctgaggatcagaggcacgtg
tctgagtctctctatccattcacctacaaccccaagatgagcctgaacctcagccaggtg
cctcctgacagtagccagaggtctccccctgccacccgtacctcacaacttggagacctc
actgaggcccaaaagaacaagcctgaagacaccactacatcccaccgcatcagtgaagga
gagactgacacagagcagggccaggacaatacagagaggagagacctgtctgaaaccctg
gagatgaggaagaacctccagaggcaattgcaggagatcatgtcagccaccaagatggct
actggccggcgctcctcggcccgcctcacccgcctgtgctccgggggttccgactctcaa
ccccacacccccgacaggcaggcccgcatgggccgcaacgcaaccggccgacgtaccctg
gaggcactgaggatgtctcgtcaggcagccatggacctgaacacagagccgtctcagagt
gagcagatcgtgtgggatgaccccacggcccgggaggagagggccaagctggctgacaac
ctgcagtggcccggcagcccctcccagcactctgaaccccttgctgtacccctagcagca
tccctctcccactctgaccacgccggaaacaccctcagggactccatgaccgactctgag
ctggtggaaatggcggtgtgtgatgtgattgaccagcagatgggtcagagggtgatgacc
ccaccagtggaggagccagagcctgacctcctcaccactaaagccccaagcatcgccttc
cctctcaccaactctcctgtgcccccagagccaaagactaaagaggagagcgaggcgaag
aaggagcctcctcgattccagctgtcctcccttaacccccaggagaggatagactacagc
gccctcatagacgagctgggtggtgtggtgctggacaagcagtgctttgaccccagctgc
tcccacatcattgtggggacccccctgagaaatgagaagtacctggcagccatggccgcg
gggaagtggatcctgcactgctcctacctggaggcctgtcgctccgtgggacacttcatc
caggaggatgagtatgagtggggcagtagctccatcctgaacgccctactgtctatcagc
tcccagcagaagaggctggcgttggccgccatgcgctggaggaggaacctgcaggaccgc
aacaaccaggagggatcattcagcggttggaccgtcatgctgaacatggaccggaccaga
gagtcagggttcagacgactcctgcagtctggtggagcaaaggttctccccagtccctct
ccatctctgtacaagggaaccacccacctgtttgcagagttcagtcggttgaagccggga
gacttccgggtggatgtgccagaggccatgtcccagggggtcaaatgcctaaagccagag
ttcatcgcagactacctcatgcaggagcctactccaccaatagagatgtactatctgcct
gaagctgcccaatgtctgccagcggccacagatgccagcggcgccaccccctcccgcaag
cgcaaagcatcaggagattcctcaaagttgaagaagacccgcctcaagtga
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