Coregonus clupeaformis (lake whitefish): 121550082
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Entry
121550082 CDS
T08357
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121550082
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121550082
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
121550082
NCBI-ProteinID:
XP_041718145
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Position
34:44034722..44082643
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AA seq
794 aa
AA seq
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MHISVLPYSFSVAMAALYQGTDVSSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKRLLEEKTELNINCVDVLGRDAVNISIENQNLDILKLLLEHGCQATDALLVAIDSEVVG
AVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDIS
LPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSADL
RELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHMANEDTVDKRGLMEER
MNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMSTVLSVAVLWPLL
SLCYLVVPRSRVGHIIHTPFVKFIIHSASYLTFLLLLNLYSLVYNEGKKNTMGPALEMID
YLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLSTFALKIVAHSKFKNVE
DTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKFLG
LFLLVLISFTIGLTQLYGKDQKDPAKSPAKDCEGIFCQQQSNDAFHTFMGTCYALFWYIF
SLAHVALFVTRINYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKSFRQIANHEDKE
WKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLLTSMSKWICSHTSTGKVKRQNSLKE
WRNLKRKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRDLL
GFRTSKYAMFYPRS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcacattagtgttctgccctactccttctccgtcgcaatggccgctctgtatcagggc
acggacgtgtcctctccggataaatttctggccctgaaagacgtgagggaggtgaaggag
gagactactctggatgaaaagctcttcctactggcctgtgagaaaggtgactactacatg
gtgaagagactgctggaggagaagacagagctcaatatcaactgtgtagatgtgctgggg
agagacgctgtcaacatctctatagagaaccaaaacctggacatccttaagctgctgctg
gagcatggctgccaggcaacagatgctctgttagtggccatcgactcggaggtggtggga
gctgtggacatcctcctcaaccatcgccccaggaggtcctctaagccctccatcgctaaa
ctgatgcagcgcatccagaaccctgagtactccaccaccatggacgtggctccagtgatc
ctggcggcccataggaacaactatgagatactgaccatgttgctgaagcaggatatctcc
ctgcccaggcctcacgctgtgggctgtgagtgtactctctgtaacgccaagaacaagaag
gacagcctacggcactccaggtttcgtctggacatctacaggtgcctggccagcccatct
ctgatcatgctgaccgaggaggaccccatcctcagggccttcgagctgagtgcagacctc
agggagctcagcctggtcgaggtggagttcaggaatgactatgaggagctggctaagcag
tgtaagatgtttgctaaggacctcctggcccaggcacgtaactctagagaactggaggtg
atcctcaaccacatggccaatgaggacacagtggacaagagaggcctgatggaggaacgc
atgaacctcagccgactcaaactagccatcaagtacaaccagaaagagtttgtggcccag
tccaactgccagcagttcctcaacaccgtctggttcggcgagacggccagctaccggcgt
aaacacacgtgtctgaagatgtccacggtactgagcgtggcggtgctgtggccgctgctc
tccctgtgctacctggtggtgccgcgctcccgtgttggccatatcatccacacgcccttc
gtcaagttcatcatccacagtgcctcctacctcaccttcctcctgctcctcaacctgtac
tctctggtgtacaatgagggcaagaagaacaccatgggccctgccctggagatgatcgac
tacctgctcatactctggatcatagggatggtgtggtcggacgtgaagcgtctatggtac
gaaggcttggaggacttcctggatgagtcgaggaatcagctgagcttcgtcatgaactct
ctctatctgtccaccttcgccctcaagatagtggctcacagcaagtttaagaatgtggag
gacacagagaggaaaaactgggatgccttccaccccatcctggtggctgaggggctgttt
gccttcgctaacgtcctgagctaccttcgactgttcttcatgtacaccaccagctccata
ctgggcccactacagatctccatgggccagatgctgcaggagtttgggaagttcctgggt
ctgttcctgctggtgctcatctccttcaccatcggcctgacgcagctctacgggaaggac
cagaaggacccggccaagagccccgccaaagactgtgagggcatcttctgtcagcagcag
agcaacgacgccttccacacgttcatggggacgtgctacgcgctgttctggtacatcttc
tctctggcccacgtggctctcttcgtgacccggatcaactacacggaggagctgaggtcg
tttgtgggagccctcatcgtgggcacctacaacatcgtggtggtcatcgttctcaccaag
ctgctggttgccatgctgcacaagagcttcaggcagatcgctaaccacgaggataaggag
tggaagtttgcccgcgccaagctgtggctgagctactttgacgacaagtgtaccctgccg
ccgcccttcaacatcctaccctcccccaagacggtgtgttaccttctgaccagtatgagt
aaatggatctgctcccacacctccacggggaaggtcaagagacagaacagcctcaaggag
tggaggaacctgaagcggaagcgtgatgagaactaccagaagatcatgtgttgtctggtc
catcgctacctgacgtccaccaggcagaagatgcagagcaccgaccaggccaccgtggag
aacctcaacgacctgcggcaggacctctccaagttccgcaacgagatgagagacctgctg
ggattcagaacctccaagtacgccatgttctacccccggagctaa
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