KEGG   Coregonus clupeaformis (lake whitefish): 121550085
Entry
121550085         CDS       T08357                                 
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein-like isoform X2
  KO
K12842  U2-associated protein SR140
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121550085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121550085
Spliceosome [BR:cclu03041]
 Complex A
  U2 snRNP components
   U2 related factors
    121550085
 Complex B
    121550085
SSDB
Motif
Pfam: Surp RRM_1 cwf21 CID CTK3 RRM_7 SET_assoc
Other DBs
NCBI-GeneID: 121550085
NCBI-ProteinID: XP_041718147
LinkDB
Position
34:44098904..44112708
AA seq 1004 aa
MADRTPGGSQKDSAKALLESKLKSFSIGKMAVSKRTLSKKEQEDIKKKEDERAAAEIYEE
FLAAFEGGEGKVKAFVRGGIANATKEEAASDDKKGKLYKPKSRFETAAAPKSNFLPLETP
PQFLTLDKRHTLKKANEKEKKKSNLELFKEELKQIQEERDERHKMKGRVSRFEPLSGMEG
KRSSLDGSSRRNRPSSVLDDAAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRYGPL
ASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNAKMIMNFEMKLGWGKGVPIPP
HPIYIPPSMVEHTLPPPPSGLPFNAQPCERLKNPNAALLPPPKNKEEFDKTLSQAIVKVV
IPTERNLLSLIHRMIEFVVREGPMFEAMIMNRELSNPMYRFLFENQSPAHVYYRWKLYSI
LQGEAPTKWRTEEFCMFKNGSMWRPPPLNPYLHGNFEEGEGPEEEEEEPGKKGCLKEEER
DQLEEMLRALTPRKGDIAEAMLFCLMHAEAAEEIVECVTESLSILKTPLPKKIARLYLVS
DVLYNSSAKVANASYYRKYFETKLCQVFSDLNATYKTIQGHLQSENFKQRVMSCFRAWED
WAVYPDPFLIKLQNIFLGLVNLAADKETPTPITVEKPSVEHPGLLAQPEPAEDIDGAPIG
EDMDGASLEDVDGVPIGLDGGTMVDGAPLGGAPLDGAPLGMDDLDGVPIKALEEDIDGVP
LDHAAAKAASFKVAPSKWEAVDESELEAQAVTTSKWEIFEQPEEKKDEGDSDDEDTKSSR
SEEPQSYPNPIRDDLDSKTKHSEMNEDRRTKLREIEVKVMKFQDELESGKRPKKPGQTLQ
EHVEHYRDKLLQKEKEKEKVEGEKEREKKDKEKSEARSKDIKKEKEESTPTRKDRKRRHS
GSPCSPPRSSSRRVRSPSPRSERSERSERLYSKDVVSSRSRSSHKDSPRTTITKKSSKRS
PSLPRTPKRSRRTRSRTPKKSAKKSRSKSRSPHRSHKKSKKSKH
NT seq 3015 nt   +upstreamnt  +downstreamnt
atggcggacagaacgcctggtggttcgcagaaagacagcgcaaaggcgctgctggagagc
aagttgaagtccttcagtattggcaaaatggccgtgagtaagaggaccctaagcaagaag
gaacaagaggatatcaaaaagaaggaggatgagcgggcagctgcagagatctatgaagag
ttcctggccgcgttcgagggaggggagggcaaggtcaaggccttcgtccgggggggcatt
gctaatgcaacgaaagaggaggctgcttctgatgacaagaagggaaagctgtataaaccc
aagtcacgcttcgaaacagcagcagcaccgaaaagcaacttcctgcctttggaaacccct
ccacagtttttaacattagataaaagacatacacttaagaaagcaaatgaaaaggaaaag
aagaagagtaacctagagctcttcaaggaagaacttaaacaaatacaggaagagagggat
gaaagacacaagatgaaaggcagagtcagtcgattcgaacctctctccgggatggaggga
aaacgctcctcattggatggttcttcaagaagaaaccgtccgtccagtgttctggatgac
gctgcacctggttcccatgacgtcggagacccctctacaacgaacttatatctcggaaac
atcaacccacagatgaacgaggagatgctgtgtcaggagtttgggcgctatggtcctctg
gccagcgtgaagatcatgtggccgcggacagacgaggaaagggccagggagaggaactgt
ggctttgtggccttcatgaaccggagggatgcggagagagctctgaagaacctcaacgcg
aagatgatcatgaactttgagatgaagctgggctggggtaaaggcgtgcccatcccacct
caccccatctacatccccccatctatggtggagcacaccctccccccgcccccctccggc
ctgcccttcaacgcacagccctgcgagaggctgaagaaccccaatgccgccctgctccct
ccgcccaagaacaaggaggaattcgacaagactctgtcgcaagccatagtcaaagtggtt
atcccaacagaaaggaatttgctctctctcatccaccgaatgatcgagtttgtggtgcgt
gagggccccatgttcgaagccatgatcatgaatcgagagctcagcaaccccatgtacagg
tttctgtttgagaaccagagcccagcacacgtgtactaccgctggaaactctactccatt
ctacagggagaagcaccaacaaaatggcggacggaagaattctgcatgttcaagaacggc
tcgatgtggcgccctcctcccctcaacccctacctgcacggcaactttgaggagggggag
gggcctgaggaggaagaggaggagcctgggaagaaaggctgcttaaaagaagaagagcgt
gatcagctggaggagatgttgagggctctgactcctaggaagggggacatagccgaagcc
atgctgttctgtctgatgcatgccgaggctgctgaggagatcgtagagtgtgtcacagag
tccctctccatcctgaagacaccactccccaagaagattgcacggttatatcttgtctct
gatgtgctgtacaactcatctgctaaagtagccaacgcatcttactacagaaaatacttt
gagaccaagctctgccaggtcttctctgacctcaatgcaacgtacaagacgatacagggt
cacctccagtctgagaactttaagcaacgagtgatgtcgtgtttccgtgcgtgggaggac
tgggccgtgtacccagatcccttcctcatcaagctgcagaacatcttcctgggtctagtc
aacctggcagctgataaggagactcccactcccatcacagtagagaaaccatcagttgaa
caccctggtctactggcccagcctgagccagcggaggacattgacggggcccccatcggg
gaggatatggacggggcctctctggaggacgtggatggggtccctatagggctggatgga
gggaccatggtggacggagcccccctaggcggagccccccttgacggagccccgctgggg
atggatgatctggatggagtgcccatcaaggccctggaggaggacatagacggagtgccc
ttggatcatgctgcggccaaagcagcatcctttaaagtagcaccttcaaaatgggaagca
gtggacgagtctgagctagaagcacaggccgtgaccacctctaaatgggagatctttgag
cagccagaggagaagaaggacgagggtgacagtgatgatgaggataccaagagttcccgg
tcagaagagcctcagagttaccccaaccccatcagagacgacttagactccaagaccaag
cactctgagatgaatgaagacagacgcaccaagctccgggagatagaggtcaaagtgatg
aagttccaggatgagttggagtctgggaaaaggcccaagaagcctggccagactctacaa
gagcatgtggaacactacagagacaaactgttacagaaggaaaaagaaaaggagaaagtg
gaaggagagaaagagagggagaaaaaggacaaggagaaaagcgaagctcgctctaaagac
atcaagaaggagaaggaggagtctactccgaccaggaaagacaggaaacggcgccacagt
ggctcgccctgcagccccccacggagcagcagtagacgggtgcgctccccatccccccgc
tcggagaggtcagaacgctctgagcgcctctactccaaggacgtagtgtcatcacgatcc
cgctcctcccacaaagactcccctcgaaccaccatcaccaagaagtcctccaaaaggtct
ccctcgttaccccgcacgcccaaacgttcccggaggacacgctccagaacacccaagaaa
tctgccaagaaatcacgttcaaaatcacggtccccacaccggtcccacaagaaatcaaag
aagagtaaacactga

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