Coregonus clupeaformis (lake whitefish): 121550096
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Entry
121550096 CDS
T08357
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121550096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121550096
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121550096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121550096
NCBI-ProteinID:
XP_041718173
LinkDB
All DBs
Position
34:45172610..45257405
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AA seq
1820 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTVTAFITLTLVLQATHVRAAEPVDVLKVLEFHNSPEGVRKT
SGFCINRRASKPDTAYRVGKQAQISAPTKQLFPGGVFPEDFSILTTLRPKAGLQSFLLSV
YSEQGVQQLGVEVGRSPVFLYEDQSGKPAPEDYPLFRSLNLADGKWHRVAISVEKKTVTI
MVDCKQKITKPLLRSDRASINTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCETPHGHSLQAQQPEDEYTTADDLDYTQFYDYSEVEGETETIPTDEYEAGSDPQLN
NVDGEYTEYTDSELVYGTVEGTQTQSPIATSGPNEAVEEEIVAGDYVVTGAAPLGQEPTG
APEAGLDSVDPGVDAYDFKEYDLGGVLDNKQYEYGVYDEYGNVAAELPNPMDTVEEEVGL
GVPAETEELTQTAVAGGGEKGQKGEPAVIEPGMLIEGPPGPAGPAGLPGPSGLQGPPGVA
GDPGDRGPAGRAGLAGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARL
AMRGPSGPMGLTGRSGPVGVPGSPGLKGDSGDPGPQGPRGVQGSAGQIGKSGKRGRGGAD
GARGMPGESGSKGDRGFDGLPGLPGEKGHRGETGPLGPPGAPGEDGQRGEDGEIGPRGLA
GESGPRGLLGPRGPPGPTGQPGVAGVDGPHGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQ
GPIGPPGEKGPQGRSGLAGLPGSDGPPGHPGKEGPPGEKGALGQSGPQGPIGYPGPRGVK
GADGVRGLKGGKGEKGEDGFPGFKGDMGLKGDRGELGVLGPRGEDGPEGPKGRAGPNGES
GPMGSAGEKGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPT
GPRGGRGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFSGPKGPPGPPGKDGLP
GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGSAGKE
GAKGDPGPQGASGKDGPAGLRGFPGERGLPGASGPAGLKGGEGPQGPSGPVGSPGERGAA
GSAGPIGLSGRTGPQGPPGPAGEKGGPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGED
GDKGEVGEPGQKGSKADKGEQGPPGPAGLQGPIGAPGPAGGDGEPGPRGQQGMFGQKGDE
GSRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGAQGPPGGV
GAMGGVGEKGENGEAGNPGTPGEPGTGGPKGERGDKGEAGPPGAAGPAGAKGPPGDDGPK
GNPGPVGFPGDPGPPGEAGVAGTDGFAGEKGEDGESGQPGPPGPSGESGPPGPPGKRGPP
GTAGAEGRQGEKGAKGESGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSS
GQDGPPGPMGPPGLPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGK
GDGGISGSSGPLGPPGPPGLPGPGGPKGAKGSSGPAGQKGDTGTIGPPGPPGPPGEVIQP
LPIQSPKKNRRHADMQADAAGTMMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPART
CKDLQLAHPEFPDGEYWIDPNQGCSGDSFSVYCNFTAGGETCIYPDKKSSGVRISSWPKE
IPGSWFSEFKRGKIFTYVDAAGKTINEVQMTFLKLLTASARQNFTYNCHQSVVWHDETTD
SYDKVLRFLGSNDEEISYDNNPYIRALTDGCATRKGYGKTVMEINTPKIDQVPIIDVMLN
DFGDASQKFGFEVGPVCFLG
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaagacgaaaaggtggcttatggattccact
gtaaccgcattcatcactttaaccctggttctgcaggctacacatgtcagagcagctgaa
ccggtcgacgtgctaaaagtattagaatttcacaattcccctgaaggagttaggaaaaca
tcaggattttgcataaaccgaagagcatctaagccggacacagcctacagagttggaaaa
caggcccagatcagtgcccccaccaagcagctattcccagggggtgtgttccctgaagac
ttctccatcctgaccaccctcaggcccaaggctggcctccagtccttccttctgtctgtc
tacagtgagcagggtgtgcagcagctgggtgtggaggtgggacgctcacccgtcttcctg
tatgaggaccagagtggcaagcccgctcccgaggactaccccctgttccgctctctcaac
ctggccgacggaaagtggcatcgtgtggccatcagtgttgagaagaagacggtcaccatc
atggtggactgtaaacagaagatcaccaaacccctcctcaggagtgaccgtgcctccatc
aacaccaacgggatcaccgtgttcggaaccaggatccttgacgaggaagtctttcagggt
gacatccagcagctgctgattgtggccgatcctaaagcagcttatgactactgtgaacac
tacagccccgactgtgaaactccccatggccactcactgcaggcccagcagcccgaggac
gagtacactactgctgatgacttagattacactcagttctatgattactctgaagtagaa
ggagagacagagaccattccaacagacgagtacgaggcaggtagtgaccctcagctaaac
aatgtagacggagaatacactgaatatactgacagtgagcttgtctacggaactgtagag
ggtactcaaactcagtctccaattgccaccagtggaccaaatgaggctgtggaggaggag
attgttgctggtgactatgttgtcactggagctgccccattgggtcaggagcccaccggt
gcccccgaggctggcctggacagtgtggaccccggagtggacgcgtatgattttaaggag
tatgacctagggggcgtgttggacaataagcagtatgagtatggggtgtatgatgagtat
ggcaatgtcgccgctgagctacccaaccccatggataccgtcgaagaagaggtggggctg
ggggttcccgcggaaacggaggaactcacccagactgccgtggctggtggtggggagaaa
ggccagaagggagaacccgctgtgatcgaacctggcatgctgattgaaggacctcctgga
cctgcaggcccagctggtctaccaggcccctcaggtctacaaggaccccctggtgttgct
ggagatcctggtgacaggggtcccgcagggcgggctggtctcgcaggagccgacggttta
ccaggtcctcctggtaccatgctgatgctgccattccgttttggaggggacggagagaag
ggtcccgtggtgtctgcccaggaggcccaagcccaggctatcctctcccaggctagactc
gccatgagaggtccctcaggtccaatgggtctcacaggaagatccggtccagtgggtgtt
cctggttctcctggacttaaaggtgatagtggagaccctggtcctcagggccccagggga
gtccaagggtctgcaggacaaataggcaaatctggcaagaggggtcgtggcggagccgat
ggcgcccgaggaatgcctggagagtcaggctctaagggtgacagaggctttgatggcctg
cccggtctgcctggtgagaagggacacaggggggagacaggaccacttggaccacctgga
gcccctggagaggacggacaaagaggcgaggatggagagatcgggccaaggggattggct
ggagagagcggtcctagaggtctgcttgggccacgcggtccacccggccccactggacaa
cctggtgtagctggagtggacgggcctcacggtcccaaaggaaacatgggacctcaagga
gagccgggacctccaggtcagcaggggatcccagggacacaaggtcttcctggtcctcaa
ggtcccatcggaccacctggtgaaaaaggacctcagggcaggtctgggttggctggttta
cctgggtcagatggacctccaggtcatcctggtaaagagggaccacctggtgagaaggga
gctttaggccagtcaggtccccagggtcctattggttatcctggtcctcgtggcgtcaag
ggtgctgacggtgttcgtggactgaagggtggaaagggagagaagggtgaggacggtttc
cctggattcaagggagacatgggtctcaaaggcgacaggggtgagctcggtgtccttggg
ccccgcggtgaggacggacctgagggtcccaagggccgagcagggcccaacggagagtct
ggccccatgggttctgctggagagaagggaaaactgggtgttccaggattacctggctac
ccaggaagacaaggtccaaagggttccagtggcttcccgggcttcccaggggccaacgga
gagaaaggagccaggggcgtggcgggcaaacccggtccaagggggcaaagaggtccaacg
ggtccacgagggggtcggggtgctcgaggtccaacaggcaagccaggtcctaagggcaca
gcgggcaatgatggtccacctggcccgcctggcgagagaggacctcaaggaccccaaggc
cccgtcgggttctcaggaccaaagggcccccctggaccacctggaaaggatgggctgccc
ggccaccctggtcagcgaggagagacgggattccaaggaaagacaggtccacccggccca
gggggtgttgttggtcctcagggtcccacaggagagaccggtcccatcggtgagagaggc
caccctggacccccaggtccacccggagagcagggtcttcctggctctgctggcaaagag
ggagccaagggagaccctggtccccaaggagcctctggtaaagatggtcctgctggtcta
agaggattcccaggagagagaggtcttcccggcgcgtcgggtccagctggtttgaaggga
ggagaaggacctcagggtccctctggccctgtgggctcccctggtgagagaggtgctgct
ggatctgctggccccatcggtttatctggtagaactggccctcaggggcccccaggacct
gctggagagaagggagggcctggtgagaaaggtccccaaggaccagctggtcgggacgga
gtccaaggtccagtgggtctgcctggccccgccggacctcaaggtccacccggagaggac
ggtgacaagggagaggttggagagccaggtcaaaagggaagcaaagcagacaagggtgaa
cagggtcctcctggcccagctggtctccagggtcccatcggtgctcctggacctgcagga
ggtgatggagagcccggtcccagaggtcagcaagggatgttcggacagaagggagatgaa
ggatccagaggtttccccgggccccctggtcccattggtctgcagggtcttcctggacct
ccaggcgagaagggtgagaacggcgatgtcggtccgatgggtccccccggtccacctggt
cccagaggtcctcagggtcctagtggagctgatggtgcacaaggtcctcccggtggtgtg
ggtgccatgggaggcgtgggtgagaagggtgaaaacggtgaagctggcaacccaggaacc
cctggagagcccggaactggaggacctaaaggagagagaggagacaagggagaggcagga
ccacctggagctgccggacccgcaggcgccaaaggaccccctggagatgatggccccaaa
ggcaaccctgggccggttggtttccctggagaccctggtccacccggtgaagctggtgtt
gctggaactgatggctttgcgggagagaaaggagaggatggtgaatctggtcagcctggt
cctcctggtccatctggtgaatctggtccacctggtcctcccggcaagagaggcccccca
ggaactgccggtgcagagggcagacaaggagagaagggcgccaagggtgagtctggagcc
gagggacccccaggtaaaactggccctgtcggcccacaggggccctcgggaaagcccggt
ccagaaggtctgcgtggaatccctggccccgttggtgaacaaggacttcctggttcttct
ggacaagacggcccacctggacctatgggaccccctggtctcccaggtctgaagggtgac
cccgggaccaagggtgaaaagggtcatccaggtctgattggtctgattggaccccctggc
gagcagggagagaagggagaccgaggcttgcctggaccccagggttctcctggaggcaag
ggcgatggcggtattagtggatcttcaggtcctctcggtccccctggtcctccaggcctg
cctggtcctggaggtcccaagggagctaagggttcatcgggtcctgctggtcagaagggt
gacaccggtacgatcggtccccctggtcctcctggtccccctggtgaggtgatccagcca
ctgcccatccagtctcccaagaagaaccgcagacacgcagacatgcaggcggacgcggca
ggtaccatgatggactacggagagggcatggaggacatcttcggttcgctcaacaacctc
aaacaggacattgagaggatgaagtaccccatgggcacacagaacaacccagccaggacc
tgcaaagacctgcagctcgcccacccagagttccctgacggcgagtactggatagatcct
aaccagggatgctcaggggactccttctctgtctactgtaacttcacggctggaggagag
acctgtatctacccagataagaagtccagtggagtcagaatatcttcatggcccaaagaa
attcctgggtcgtggttcagtgaatttaagcggggtaaaatatttacatacgttgacgca
gctggcaaaacaataaacgaggttcagatgaccttcctgaaactactgaccgcctcggcc
aggcagaacttcacctataactgccatcagtctgtggtgtggcacgatgagaccaccgac
agctatgacaaggtgctgcgattcctaggatccaacgatgaggagatatcctatgacaac
aacccctacatcagggccctaacagacggatgcgcgacgaggaagggctacggaaagact
gtgatggagattaatactcccaaaatcgatcaagttcccatcatcgatgtcatgttgaat
gactttggagatgccagccagaagtttggatttgaagtgggtccagtctgcttccttggc
taa
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