Coregonus clupeaformis (lake whitefish): 121550099
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Entry
121550099 CDS
T08357
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121550099
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121550099
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121550099
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
AAA_22
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
121550099
NCBI-ProteinID:
XP_041718182
LinkDB
All DBs
Position
34
Genome browser
AA seq
2318 aa
AA seq
DB search
MGTGSQVRLLLWKNWTLRKRQKIRFFMEIMWPVVLFIGLVWLRSANPLYRQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFQYATRGEGLGLVSNYNDSILARFYLDTQELLLSDPEFL
QLGRLWRELFTMSTFMDTLRTNPEQVSGRGLKVEDILKDDETLTSFLLRDVPLSEDVVIE
LVNAKIRPEQFVFGVPDLHLKDIACSQTLLERFIIFPSRRGLYRVHSAICVLTPQRLQTI
EDRLYANVDFFKLFRQLPRVLDNHSNGVDLNFWARVLSAASEKLRELSERNSSRALVEVM
SPLLQTQGPQGGSPPSFSQLMGAVSSLVCGYMEGAFSRVASFNWYEDNNYKAFMGINDST
RGGQGQYTYDHTATPFCNDLMKELESNPITRIMWSSVKPMLMGKILYAPDSPAVRKIIRN
ANTTFEELERLRTMGRAWEEVGPQVWAFFQDSIQMNMIRDTIRNPTVRDYIDRSLQDTEF
SSKHILNFLYNGPIEDRDYDIANFDWRNVFNLTDQVIRMMNQYGECLILDKFSGLNNEEQ
MTHRALSLMGESKFWAGLVFMDTYPWTTKVPPHVRFKIRMDIDAVERTNKIKDRYWDPGP
RADPMDDLRYVWGGFAYLQDMIEHGIIRTQTGKDWPIGVYLQQMPYPCYVDDLFMLTLNR
CFPIFMVLAWVYSVSMTVKSIVLEKELRLKETLKTMGVTNGVLWVTWFIDSFLMMAASTA
LLTGIIMGGKVLNYSNPLILFLFLLTFTTATIMQCFLLSVFFNKANLAAACSGIIYFTLY
LPHILCFAWQDRITKDDKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEGDE
YSFLTSISMMALDTVLYAVLAWYLDNVFPGQYGIGRPFYFPILPSYWLNSRPPKPKELEK
PRFDNLVNQTEENQKTNHVPGDDQNTKAPDEELPSCKHQDKRERLGKGKTEEEEEEEKNQ
EEKQNGEKEGQPSHAYFEGEPAGLVEGVCVQNLVKVFGRGQKPAVDGLSITFYESQITAF
LGHNGAGKTTTMSILTGMFPPTSGTASIYGKDIRTDMDTIRHSLGMCPQHNILFHHMTVE
EHILFYSLLKGRSLSEAQLEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGAK
VVILDEPTSGVDPYSRRSIWDLLLKYRSGRTVILSTHHMDEADLLSDRVAIISQGRLHCC
GSPLFLKNCFGAGFYLTLVRRMKYEEPKAKMKCDCTDECSCKCSTCTTYKEELRQAKTPD
RQLDGDLSSITGLVHHHVPEARLIEAIGQELTYLLPNQGFQPRAYASLFRELEETLSDIG
LSSFGVSDTSLEEIFLKVTANGEAKSGKTEQEADGVTQANRQGHSGGLEGSEGRGSGQVK
GVCLVLKQLFALLIKRFHHATRSHKDFFAQIVLPASFVFISLMFTTIVPPFGEYPSLTLS
PWMYGRQFTFFSNERTLDPEMRYFGEVLLNKPGFGTRCMVDEPLEDFPCNNITTEWEMPL
VNPALIDMLDGPEWTSVNPSPGCQCSTPRKLTMLPVCPEGAGGLPPPQRIQSTGDVLVDL
TGRNISDYLVKTYPSLIKASLKSKYWVNEQRYGGISVGGQLPVLDVDPKTIQDAASQLGR
LLNVTGGKYSKQTLKDIGTFLRYMESEYNVKVWYNNKGWHAMVAFMNVANNAILRANLPK
DASLDVYGITTINHPLNLTKEQLSEVTVLSTSVDVMVAICVIFAMSFVPASFVLYLIQER
VTQAKHLQFVSGVSPVIYWMANFLWDMVNYSISAALVVGIFMVFDKKCYTSPTNLQPLIT
LLMLYGWSVTPMMYPMSYIFSIPSTAYVSLSCINLFIGINSSAITFILDLFDSTAALYKC
NQLLKKMLLIFPHYCLGRGLIDMAMNQAVTDVYARFGEDFSLDPYSWDFVGKNLVFMAVE
GFVYFIMNILIQYRFFLDHWITDCKKDPIMEEDVDVAQEREHIYNGGSKNDILKIRDLTK
TYMGKTKPAVDRICVGVSPGECFGLLGVNGAGKTTTFKMLTGDTDVSSGEASVTGHSILT
NILDVHQNMGYCPQFDAIDELLTGREHLHLYARLRGVPESEISRVADWAIQKLGLAEYAG
HTAGTYSGGNKRKLSTAIAMIGCPPLVLLDEPTTGMDPHSRRFLWNSIMSVIQDGRAVVL
TSHSMEECEALCTRLAIMVNGTFQCLGTIQHLKYKFGDGYVVTMKIQASTSGCPPDLNPA
EAFMESTFPGCVQREKHYNTLQYEIASSSLARIFQLVLANKDCLNIEDYSVSQTTLDQVF
VNFAKQQSGEDDGMVLHPRAAGARRKEIKVTPLSCLGK
NT seq
6957 nt
NT seq
+upstream
nt +downstream
nt
atgggtacgggcagtcaagtccgattgctgctgtggaagaactggacacttcgcaagaga
cagaagatccggttcttcatggagataatgtggccagtggttctgttcattggactagtg
tggctgagaagtgctaaccctttatatcgccaacatgagtgtcactttcccaacaaggcc
atgccctcgactggcatccttccatggatccagggaatcttctgcaacgccaacaaccca
tgcttccagtacgctaccaggggagagggcctcggactcgtctccaactacaacgattcc
atactggctcggttctacttggacacccaggagcttctgctgagtgacccagagttcctg
cagcttggtcggctctggagggaactgttcaccatgagcaccttcatggacaccctgcgg
accaacccagaacaggtctcaggtcgagggctgaaggtagaggacattctgaaggatgat
gagaccctgacgtcctttctcctaagggatgttcctctgtcagaggatgtggtcattgag
ctggtcaatgccaagatcaggcctgagcagtttgtgtttggcgtccctgacctccacctg
aaggacattgcctgcagtcagaccctgctggagcgcttcatcatcttccccagccgcagg
gggctgtacagggtgcacagcgccatttgtgtcctcacaccacagagactacagaccata
gaggacaggctctacgccaacgtggacttctttaaactcttccgtcagcttccccgggtg
ttggataaccactccaacggcgtcgacctaaacttctgggccagagtactctccgccgcc
tccgaaaagctgcgagagttgtcagagaggaacagctccagagcgctggtggaggtgatg
tcccccctgctccagacccaggggccccaggggggctctcccccgtctttcagccagctg
atgggggctgtgtccagcctggtgtgtggctacatggagggggccttctctcgggtggcc
tccttcaactggtatgaggacaacaactacaaggccttcatggggatcaacgatagcacc
cggggaggacagggacagtacacttacgaccacaccgccactccgttctgtaatgatctg
atgaaggagctagagtccaatcccatcaccaggatcatgtggagctctgtcaagcccatg
ctgatggggaagatcctctacgcacccgactccccagccgtcagaaagataatcagaaat
gccaacaccacatttgaggagctggagaggctgaggaccatgggtcgggcctgggaggag
gtgggtcctcaggtttgggccttcttccaggacagcattcagatgaacatgatcagggac
accataaggaatcccacggtgagggactacattgacaggagtctacaggacacagagttc
tcctctaaacacatcctcaacttcctgtacaacgggccaatagaagacagggactacgac
attgccaattttgattggaggaatgtcttcaacctcacagaccaagtcatccgtatgatg
aaccagtatggagagtgtctgatcctggataagttctctgggctgaacaatgaggagcag
atgacccacagagctctgagtctgatgggggagagtaagttctgggctggcctggtcttc
atggacacctacccctggaccaccaaggttccaccccacgtccggtttaagatccgcatg
gacatcgacgcagtggagcgcaccaataagatcaaggacagatactgggaccctggtcct
agggcggaccccatggatgatctgcgctacgtgtgggggggctttgcctatctgcaggac
atgatagagcatggcatcatcaggacccagacaggcaaggactggcccatcggtgtctac
ctacaacagatgccctacccatgctacgtggacgacctcttcatgctgacattgaaccgt
tgcttccccatctttatggtgctggcgtgggtctactcagtgtctatgaccgtgaagagc
atcgtcttggagaaggagctcaggctcaaggagaccttgaagaccatgggggtcaccaac
ggggttctgtgggtcacatggttcatagacagcttcctcatgatggctgccagcactgcc
ctgctcactgggatcattatgggtggtaaggtgttgaactacagcaaccccctgatcctg
ttcctgtttcttctaaccttcaccacggccaccatcatgcagtgtttcctactcagtgtc
ttctttaacaaggctaacctggctgcagcctgcagcggtatcatctacttcaccctctac
ctgccccacatcctctgcttcgcatggcaggaccgcatcaccaaggatgacaagatcatg
gcaagcctgatgtcccaagtggcgtttggctttgggacagagtacttgtcccgttatgag
gagcagggtctgggtctgcagtgggacaacatccagaccagccctctggagggggatgag
tactccttcctcacctccatctccatgatggccctggatactgtactctacgccgtcctt
gcctggtacctcgacaacgtcttcccagggcagtatggaattggtcggccattttatttc
cccatcctgccctcctattggctcaattccagacccccaaagccaaaagagttggagaaa
cccaggtttgacaacctggtaaaccagactgaagagaaccagaagaccaatcatgtacca
ggtgacgaccagaacactaaggcaccagatgaggagcttccatcctgcaaacaccaggac
aaacgagagaggctggggaaggggaaaacagaagaggaggaggaggaggagaagaaccag
gaggaaaaacaaaatggagaaaaagagggtcagcccagtcatgcctactttgagggggag
ccagcagggctggtggagggtgtgtgtgttcagaacctggtcaaggtgtttggcagggga
caaaagcctgcagtagacggactgagcatcacattctatgagagccagatcactgctttc
ctggggcacaatggagctgggaagaccaccaccatgtctatcctgacggggatgtttcct
cccacctcggggacagcctccatctatgggaaggacatccggacagacatggacaccatc
aggcactctctgggcatgtgtccccagcacaacatcctctttcaccatatgaccgtagaa
gaacacatcctgttctacagcctgctgaagggaaggtctctgtctgaggctcaactggag
gtagagaacatgctggaggatctgggcctgccgcacaagagagacgaggaggcacagaac
ctctcaggcggcatgcagaggaagttgtctgttgccatggcgtttgtaggcggtgccaag
gtggtgattctggacgagcccacgtcgggggtggacccctactccagacgatctatctgg
gacctgctgctcaagtaccgatcaggacgtacagtgattctgtccactcaccacatggac
gaggctgacctgttgagtgaccgtgtggccatcatctctcagggtcgtcttcactgctgc
ggctccccgctcttcctcaagaactgcttcggtgccggcttctacctcaccctggttcga
cgcatgaaatacgaggaacccaaggccaagatgaagtgtgactgtactgatgagtgttcc
tgtaagtgctccacctgtaccacgtacaaagaagagttacgtcaagccaaaaccccggac
agacagttggacggtgacttgtcaagcatcacagggctggtccaccaccatgtcccagag
gctcgtttgatcgaggctatcggccaggagttgacctacctgctgcccaaccagggcttc
cagcccagggcctacgcctccctcttcagagagctggaggaaaccctctctgacatcggc
ctcagtagcttcggggtctccgacacatcactggaggagatattcctgaaagtgacagcg
aatggtgaagccaaatctggcaaaactgaacaagaggcagacggggtgacccaggccaac
aggcaggggcattctgggggcttggagggcagcgaggggcggggctctggacaggtcaaa
ggtgtctgtctggtcctgaaacagttatttgccctgctcatcaaacggtttcaccacgcc
acaagatcacataaggacttctttgctcagatagttttgcctgccagttttgtgttcata
tcactgatgttcactacgatcgtacctccatttggagagtaccccagcctgacccttagt
ccctggatgtatggacgacagttcaccttcttcagtaacgagcgtaccctggaccctgag
atgaggtactttggagaggtgctgctaaacaagcctggatttgggactcgctgcatggtg
gatgaacctctagaggatttcccatgtaataacatcacaacagagtgggagatgccgctg
gtgaaccctgctctgatagacatgttggatggaccagagtggacctcagttaacccctcc
ccaggctgccagtgtagtacccctaggaaactcacaatgctgcctgtctgccctgaggga
gcaggggggcttccaccaccacagaggatccagtcgacaggtgatgttctggtggacctg
acaggcaggaatatctctgattatctggtgaagacttacccctccctcatcaaggccagt
ttgaagagcaaatactgggtgaatgaacaaaggtatggaggtatatctgtgggtggacag
cttcctgtgttagatgtggaccctaagaccatccaggacgcagcatcacagctggggcga
ctgcttaatgttactgggggtaaatactccaaacaaactcttaaggacattggaaccttc
cttcgatacatggagagtgaatacaatgtcaaggtgtggtacaacaacaagggctggcat
gccatggtggccttcatgaacgtggccaacaacgccatccttagagccaacctgcccaaa
gatgccagcctggatgtatacggcatcaccaccatcaaccaccctctcaaccttaccaag
gaacaattgtctgaagtcactgtcctgagcacctcagtggatgtgatggtggctatttgt
gtgatcttcgccatgtccttcgtcccagcctcctttgtcctctacctcatccaggagagg
gtgacccaggccaaacacctccagttcgttagcggggtcagtcccgtcatctactggatg
gccaacttcctctgggacatggtgaattactctatcagtgcagcactggtggtgggtatt
ttcatggtctttgacaagaagtgctacacgtcgccaaccaacctccaacccctgataacc
ctgctcatgctctatgggtggtctgtgacgcccatgatgtaccccatgtcctacatcttc
agtattcccagcacagcctacgtctctctgtcctgcatcaacctgttcattggcatcaac
agcagtgccatcaccttcatccttgacctgtttgacagcacagcggctctgtataagtgt
aaccagctgctgaagaagatgctgctgatcttcccccactactgtcttggccggggtcta
atcgacatggctatgaaccaggctgttactgatgtctatgcccgctttggtgaggacttc
agtctggacccgtacagttgggactttgtaggaaagaacctggtcttcatggctgttgag
ggctttgtctatttcatcatgaacatactgatccagtaccgcttcttcctggatcactgg
attacagattgtaagaaggatcccatcatggaggaagatgtggacgtggcccaggagaga
gaacacatctataatggtggaagcaagaacgacatcttaaagattagagacctcaccaag
acatacatggggaagactaagccagcggtggacaggatctgtgtgggagtgtcacctggg
gagtgctttgggctcctgggtgtgaacggagcagggaagaccaccacctttaagatgctg
accggagacactgatgtcagctcaggagaagcctctgtcactggtcacagcatcctgacc
aatatcctggatgtgcaccagaacatgggctactgcccccagtttgatgccatagatgag
ctgctgactggcagagagcacctccatctgtatgcccgcctcagaggggtgcctgagtcc
gagatcagcagggtggcagactgggccattcagaagctgggtctggctgaatatgctggc
cacacagccgggacctacagcggcggcaacaagagaaaactatccacggccatcgccatg
atcggctgtcctccactggtcctgctggacgagcccaccactggcatggacccccactca
cgtcgtttcctgtggaactccataatgagtgtaatccaggatggccgagcagtggtcctc
acctcacacagtatggaggagtgtgaggctctgtgtacccgtctggctattatggtcaat
ggaaccttccagtgtcttggtaccatccagcacctcaaatacaagtttggtgatggttat
gtggtcaccatgaagatccaggcctccacatcaggttgtcccccagacctgaacccagcc
gaggccttcatggagagcaccttccctggctgtgtccagagggagaaacactacaacact
ctgcagtatgaaatcgcctcttcctccttggctaggatcttccagctggtcctggccaac
aaggactgcctcaatatagaggactactccgtctcccagacaacactagatcaggtgttt
gtgaactttgcgaagcagcagtcaggagaggatgatggcatggtgctgcacccgagggcc
gctggggcacggagaaaagaaattaaggtcacacccctaagttgtctggggaaatga
DBGET
integrated database retrieval system
