Coregonus clupeaformis (lake whitefish): 121550210
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Entry
121550210 CDS
T08357
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121550210
04020 Calcium signaling pathway
121550210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121550210
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121550210
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
121550210
NCBI-ProteinID:
XP_041718291
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Position
18:17552111..17689498
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AA seq
1898 aa
AA seq
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MSMKIYGLGPMSYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGLFNFDEETPTTNFDT
FPAAILTVFQILTGEDWNAVMYHGIESQGGVPGGMFSSIYFIVLTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEEQEVAITKKMALQKAKEVKEVSPMSAASISITALHSILYTGQHGA
ERAVPASFVKQSQGALSSSSSICSVNSLKEQQKSLKMMSVWEQRTTQLRRHNLRASSEAL
YSELDPEERLRMSSALHIRPDMKTHLDRPLVVEPHDGPGPMGQHKPRTPEETDTPGDPAG
PQPRRHHRHRDRERPIDEANENGDPSKEGRHHVHHSRSKDPDGTRGKEGKSERSRSQEGG
RRHHHQTLVDEAGGGGTGTGEREHRHHHSHRQAREGNGTVNSGGKGERRSRHKDGRSGER
CSRGENGANGERRRHKTHSSRGQSTLEGEEHSERERGKGHRDRYVESEGDSLAISPQQDP
GDQRWGTEGPEDSDNQRNVRRTGQTAVNIPPVTITPPPGETTLIPMNSIDRETMPMNDEK
KTLEERTQSGPRPILPYSSMFVFGQTNVVRRLCHYIVSLRYFEMCILVVISMSSIALAAE
DPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGA
LVAFAFSSFMGPPQGVPRGSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSL
KNVFNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGNFLDYDKDEVAAQPR
VWKKYEFHYDNVLWAFLTLFTVSTGEGWPDVLKHSVDATFEDQGPSPGYRIEISIFYVVY
FVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRYMPENVQS
FQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKHFNIVFTALFSLECI
LKIIAFGPLNYLKDAWNVFDFVTVLGSITDIVVTEINTTDRLLNLSFLRLFRAARLIKLL
RQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDTAITHHNNFR
TFLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGNLGKECGSDFAYFYFVSFIFLCSF
LMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDMYQMLLHMS
PPLGLGKKCPPRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLSSGMVAQRLSD
AELKKELSTVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLKEQQQQ
QQQQNAAGSQGKVGALFKPILPLAHKQEKEKAMNNMEPPCELLPQPQPQALPRPIATLLN
MEHPCELLHQPQPQALPRPSATLLNNGGTLPGHDSTMKGSSSWVSEKSREVHRPRSKKTV
QRGQSEDVPDTTIPQESVEMRKLDTSDSTVPGPGSGLESQGRAVSMPRLNTELQRSQSHH
SPGTLLAPVPDCSPMTRSASTHAPQRPQEVNMRDYTLETPSIQERPHHHHHHRCHHRRER
DKKQRSLNRTPSTAGTPGNPVAEPSSRDRVQDRGRSHERKHHSTAGEKQRYYSCDRYGSR
EHCHITKSSTASCATSPIEVQDPSINKQGSGSVKGSPVMMTSGASTPSRGRRQLPQTPLT
PRPGVAYKTANSSPVHFVSAQCGSGLPTLSPGRLSRGLSEHNALLHSGSSHIPSPVTRIS
SEPFLGYCHSEPQGQGSLYCSLRDELLSPYAARARSPRTALPQMGPGPLHLPPPPQQSGA
VPNGYHFTFGGNANASLGSGSGARAPRYYHEAEEEEWC
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaaaatatatggactaggacccatgagctacttccattcctctttcaactgt
tttgattttggagtgattataggcagtatttttgaggtgatctgggcagttgtgaaacct
ggggcctcctttggcatcagcgtcctgagagctctccgtctgcttaggattttcaaagtc
actaagtactggaactctctgaggaacctggtggtctctctactcaactccatgaagtcc
atcatcagcctgctcttcctcctcttcctcttcattgtggtgttcgccctactgggcatg
cagctctttgggggactgtttaattttgacgaggagacgccaacaacaaactttgacacc
tttccagcagccattctcacagttttccagattctgacaggagaggactggaatgcagtg
atgtatcatgggatagagtctcaggggggcgtgccggggggaatgttctcctccatctac
ttcatcgttctcaccctgtttggaaactacactctcctcaatgtcttcttggccattgct
gttgacaaccttgcaaacgcacaggagctcactaaggatgaggaggagcaggaggtggcc
atcaccaagaagatggccctccagaaggccaaggaggtcaaggaggtcagccccatgtcg
gcagcgagcatctccatcacagcgctacacagtatcctgtacacaggccaacatggagcg
gagagggcagtgccagcaagttttgtaaagcaaagtcaaggtgcactctctagcagctcg
tccatctgcagcgttaattcacttaaggagcagcagaagtctctgaagatgatgtcagtg
tgggagcagagaaccactcagctgaggagacacaacctgcgggccagcagtgaggccctg
tacagcgagctggaccctgaggagaggcttcgtatgtcctccgccctgcacatccgccct
gacatgaagacccacctggaccggcccctggtggtggagccccatgacggccccggcccc
atgggccaacacaagccccggacccctgaggagacagatacccctggggacccggccggc
ccccagccacgcaggcaccaccgccaccgggacagggagagacccatcgacgaggccaat
gagaatggagatccaagcaaagagggtaggcaccatgtccaccacagtcgcagcaaggac
ccagacggcacccggggcaaggaggggaagagtgagcggtcgcgcagccaagaggggggc
aggaggcaccaccaccagaccttagtggacgaggcaggaggagggggaacggggacgggg
gagagagagcatcgccaccaccactcccacagacaggccagagagggtaacggcactgtc
aacagcggaggcaagggggagcgcaggtcacgccacaaagatggccgctcgggagagagg
tgctccaggggagagaacggggccaatggggagaggaggagacacaagacccacagctcc
aggggccagtccacactggagggagaggagcacagtgagagggagagggggaagggccac
agggacagatatgtggagtctgagggagactccctagccatcagcccccagcaggaccct
ggagatcagaggtggggcacagagggacctgaagactcagacaatcagaggaacgtcaga
cggactggacagacggccgtcaacatcccccctgtcaccatcaccccccctcccggggag
accacccttatccccatgaacagtatagaccgtgagaccatgcctatgaatgacgagaag
aaaaccctggaggagcggactcagagtggacccagacccatcctgccttacagctccatg
tttgtgtttggccagaccaacgtggtgcggcgtctgtgtcattacattgtgagcctgcgg
tactttgagatgtgtatcctggtagtgatatccatgagtagcattgcattggctgcagag
gaccctgtccaggccaacgctccacgcaacaatgtgctcaagtatctggactacgtcttt
acgggagttttcacatttgagatggtgattaagatggttgacctgggcctcctgctccat
cctggttcttacttcagagatctctggaacattctggacttcattgtggtcagtggagca
ctggtggcatttgcattttcgagcttcatgggaccgccacaaggtgtgcccagagggtcc
aaaggaaaggacatcagcaccatcaagtccctcagagtgctgagagtcttacggcccctc
aagaccatcaaacgcctacccaagctgaaggctgtgtttgactgcgtggtcaactccctg
aagaacgtgttcaacatcctcatcgtctacatgctcttcatgttcatcttcgctgtcatc
gccgtgcagctgttcaagggcaagttcttctactgcaccgatgagtccaagggactggag
aaagactgcagaggtaatttcctggactacgataaagatgaggtggccgcccagcctcgg
gtgtggaagaagtatgagttccactatgacaatgtgctgtgggccttcctcactctcttc
actgtgtccaccggagagggctggcccgatgttctgaagcactctgtggacgctaccttt
gaggaccagggtcccagtccaggctaccgtatagagatctccatcttctacgtggtctac
ttcgtggtcttcccattcttcttcgtcaacatctttgtggccttgatcatcattaccttc
caggagcagggagacaaggccatgtcagagtgcagcctggagaaaaatgagagagcctgc
attgactttgccatcaatgccaagccactgacgcgctacatgccagagaacgtgcagtcc
ttccagtaccggatgtggaagtttgtggtgtcacctccgtttgagtactccattatgatc
atgatcgccctgaacaccgtggtgctcatgatgaagttccatggagctccagacttctac
gaggccatgttgaagcacttcaacatcgtcttcactgccctcttctctctggaatgcatt
ctgaagatcatcgccttcggtccgctgaattacctgaaggatgcctggaacgtgtttgac
tttgtgacagtgctgggaagtataactgacatcgtggtcacagaaatcaatacaacggac
cggctgttgaatctgagttttctgaggctgttcagagcagctcgtctcattaagctgctg
aggcagggctacaccatccgtatcctgctctggaccttcgtccagtccttcaaggcccta
ccctatgtttgccttctgatagcgatgctgttcttcatctatgccatcattggtatgcag
gtgtttggaaacattgagctcaacgaggacacagccatcactcaccacaacaacttccgc
acttttctccaggccctcatgctactgttcaggagtgccacgggggaggcgtggcatgag
atcatgctgtcgtgtttgagtcacagagcctgcgatgagaggtcaggcaacctggggaag
gagtgtggcagcgacttcgcctatttctactttgtctccttcatcttcctctgctccttc
ctgatgctcaatctgtttgtggctgtcatcatggataactttgagtacctgactcgagac
tcgtctatactggggcctcatcatctggatgagttcatccgtgtttgggctgagtacgac
cctgctgcctgtggccgtatcaagtaccttgatatgtatcagatgctcctccacatgtcc
ccacccttaggtttgggaaagaaatgtccgccaagagtcgcctacaagcggctagtcaag
atgaacatgcccatcgctgatgacaacacagtccactttacctccactctcatggccctg
atccgcacggccctggagatcaaactatcctcagggatggttgcccagcgtctttctgat
gctgaactgaagaaagagctctctacggtttggccaagcctttcacagaagactatggat
ctgttggtgacaccacacaaacccaatgagcttactgttgggaaggtgtatgcagccctg
atgatctttgactactacaagcagaaccgagccaagaggctcaaggagcagcaacagcag
caacagcaacagaatgctgccggctcccagggtaaggtgggggctctgtttaaaccaata
ctgccgctggctcacaagcaggagaaggagaaggccatgaacaacatggagcctccctgt
gagctacttcctcagccccagcctcaggccctacctagacccatcgccacactgctcaac
atggagcatccctgtgagctacttcatcagccccagcctcaggccctacctagacccagc
gccacactgctcaacaacggaggcacactgccaggccatgacagtaccatgaaaggatcg
tcctcctgggtgtcagagaagtcaagagaggtccacagacccaggagtaagaaaactgtc
caaaggggccaatctgaagatgtcccagatacaaccattccccaggagtcagtggagatg
aggaagctggacaccagtgacagcactgtgcctggtcctgggtctggactggagagccag
gggagggctgtgtccatgccccgcctcaacacagagctgcagaggagccagtcacaccat
tccccggggaccctgctggcccctgttcctgactgcagcccaatgacgcgctctgcgtcc
acccatgctccccagcgcccccaagaggtgaacatgcgtgactacaccctggagacaccc
agcatccaggaaaggcctcaccaccaccaccaccaccgctgccaccaccgcagagagagg
gacaagaagcagcggtcactcaacaggacgccaagcaccgctggtacaccaggtaacccg
gttgcagagccctcgtctagagacagggtgcaggaccgcggccgctcccatgagaggaag
caccactcaacagcgggggagaagcagcgctactactcctgcgatcgctacggcagcagg
gaacactgccacatcaccaagtcttccactgccagctgtgccacctcccccatcgaggtg
caggaccccagcatcaacaagcagggtagtggttcggttaaaggcagcccagtgatgatg
acctcaggggctagcacacccagccgtggacgcaggcagctaccccagacccccctgacc
ccccgacccggggtggcctacaagactgccaactcctcccctgtgcactttgtgtctgcc
cagtgtggcagcggcctgcccaccctgagtcctggccggctgagccgcgggctgtccgag
cacaacgccctgctgcacagtggctcctcccacatcccctcccccgtcacccgcatcagc
tccgagcccttcctgggctactgtcacagtgaaccccagggccagggcagcctgtactgc
agcctccgggacgagctgctgagcccctatgctgccagagcacgctcccctcggactgca
ctgcctcagatggggccggggcccctccacctgcctccaccaccccagcagagcggtgca
gtgcccaacggataccacttcacctttggtggtaatgccaacgccagcctgggctctggc
tctggcgccagggcacccagatactaccacgaggcagaggaggaggaatggtgctag
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