Coregonus clupeaformis (lake whitefish): 121550292
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Entry
121550292 CDS
T08357
Name
(RefSeq) nuclear receptor corepressor 2 isoform X1
KO
K06065
nuclear receptor co-repressor 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121550292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121550292
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
121550292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
DUF4820
DnaT
Motif
Other DBs
NCBI-GeneID:
121550292
NCBI-ProteinID:
XP_041718426
LinkDB
All DBs
Position
18:complement(56448119..56567733)
Genome browser
AA seq
2471 aa
AA seq
DB search
MSSHPQSVPQGRRAVDTRHLPNPASLPLQLARAHTDVGLVDYHPHSRDYSSHLVQPHRRR
PSLLSEFQPGNERGQEQHIRYEHIYLPEPNSQLEVEYAEMKRPRLDMGAESLMRHSSHRP
QLPLGGAEDMLKDRGSSMGKLEPISPVSPAQMDPDLDLVPARFSKEELIQNMDRVDREIT
MVEQQICKLRKKQVQQQLEEEAAKPQEPERSMISPPPSEAKHRSLVQIIYDENRKKAEEA
HRILEGLGPRVELPLYNQPSDTKQYHENIKINQAMRKKLILYFKRRNHARKQWEQKFCQR
YDQLMEAWEKKVERIENNPRRRAKENKVREYYEKQFPEIRKQRELQERMQSSRVGQRGGG
LASSAARSEHEVSEIIDGISEQENTEKQMRQLAVIPPMLFDAEQQRIKFINMNGLMDDPM
KVYKDRQLMNMWSEQEKDTFREKFIQHPKNFGLIASFLERKTVAESVLFYYLTKKNENYK
NIVRRNYRRRGRSQHGQQQQQQQQPQVNRSSQEEKEKEKEEKEKEKEKEKEKEKDGERDE
EKTEGEDKEDVMKDDTSGEDGEDKEPTVAFKGRRTANSQGRRKGRITRSMTSEVEETATP
PLSSELANLEMNESSRWTEEEMETAKKGLLQYGRNWSAIAKMVGSKTVSQCKNFYFNYKK
RQKLDEILQQHKMKSERERKARRKGKALQSEEASAPSAAEEEEMEGSGASGNEEEAPEDG
EGGANNSSDTESLPSPRSEDSKAKEEGGGRAKAGSNPEDKEASGSHMVQGGDEKPPGDGD
KAIKQEVKTEAGEGSKELPSESTDRDRKPPTAEAEEGKSSSKSSKRDHEPKTGSHADSDS
SATCSADEVEESENTEKNRLTSPSRPSLLNYAHDGVISSPLQKPMDLKQLKQRAAAIPPI
MPQMPEGGPRGGGGKAVLPPHALALYQQQITMAHGESSQEAKQQQHAGQPSKQHPYPAQG
DRDPHNISSPRIRPRSPSTSDKDELEGNERWLQTLLHGLHKSRAFSPHGDPKKQAVGPED
LRATTLGRPVMSPYPMSPRDMAKLSHDQHLLHYNSSFQQVGHSGPPGLQQDGARLAAVRP
LHMPEPPPLISSNKPGGSITQGTPVQLHSPAHGMDHGKMPPAQMGLSWMDQRKVGESKCL
EWVQHSQPWFAGPYPVVKQEQLSPRCSSSQAENLSTQGAPHDTNAGRGSMPAVQGGSITK
GIPGTRVHQDSPISYRGGSITQGTPADVLYKGTITRLITEDSPSRAERERDEALSKGHVV
YEGISGHILTYDRLPSQNPKEDGRGQPGEILGLKRPYDVMEGGISRGLPTRDSLSAANCE
GLIGRAMPHERDSPHPTHHIRGSISQGIPRHLDPQDGYMRREAKQMKREGSPPRGPGLMA
DPMKGREVPTVKEGGRSIHLIPREELRQMPEGMMMAKAGKEGIIAQGTPMKQEQGGSRKG
HDVRSIIASSPRSHYGMPPHLEMRGPEQRVRYDEGPKGRPSAVVSTASSMARSSPLAMGG
EQGGKAHHSPVGYEEHKGGMRAPYPGPSHRGSPLSRESGQRQHEGSNKNQPQERKSTPTP
REMSSGKSPLPCVAEQQAQQQAQQQASLASYERLLQGLGADVYRGQIPLAFDPAALRQGI
PIDPAAYYLPRHLAPNPGYPHPYPYLIRGFPDTAALENRQTLLNDYITSQQMHQWPAAAA
MAAQRSDLLRGLSPRDQPLQLPYSAAPRGIIDLSQVPHLPVLVPPSAGSSGSPMDRITYI
PGGQGAFTSQPYTTSPISPVGPQHMSKQHGTLSSADRERERDRERDRERDREQERERDRE
RQRDRERERERERDRDREKGISHGNVEHAPIWRPGTEHSSGGSVRPSSHSGYGHQHSPVS
PRTQDSVQQRPSVLHNTGGKSLPVSDHNNPSVLRSMPGSNRYPGYGHLQRTGVPPEGYPP
SMDSKEMCRDGGKSRGGLPKHTQDQHGPSISSSKSDPKLASPNQGGYPGPYPQGSAASHH
SGRPPHLLPPQSDNPAGRGESGTPSREKTQNKPMSVQEQELRALGKTTMTAANFINAIIM
RQISCETGMPETGSLVANSACDVQQKMMPMEQHVLYRPPSEERLSPGQQPQSPLVKGSQR
VVTLAQHISEVITKDYTRQSQQAQQQVPMQQSYHNNSVLDLTRPPSAPQAPPASQEPSQG
PRYTPEGAGGDRPRDRSPPQPKVSPVNMSTDGIEPVSPAGAMSEPETQGASYPNEQGMGS
RSPPSTSQPPAFFSKLTESTSAIVKSKKQEMIKKMTVVGSDADFNPGQPGTEIFNMPAST
TAGPVSIRSHPAPEVSGNTIGLEAIIRKALMGKYDDQAEERPPSSNAINPMVASVPAAML
PADGRTEDSYSLQGGGKPKGSGRSNGRKAKSPGPGLSVGERPSSVSSVHSEGDTNRRTPV
TNRVWEDQPSSTGPTTFPCNPLTMRFPSGMPVSNSSPTPSGQLGAQGQGRSWEEEPKPLL
CSQYETLSDSE
NT seq
7416 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccacccccagtctgtgcctcagggcaggagggctgtggacacccgccacttg
ccaaaccctgccagtctaccactgcagctggcacgggcacatacggatgtgggactggtg
gactatcaccctcactctcgggactacagctcccacctggttcagccccaccgccgccgg
ccctctttgttgtccgagttccagccagggaatgagagaggtcaggagcaacacatccgc
tacgagcacatatacctgcccgagcccaacagccaattagaggtggaatatgctgagatg
aagcgtcctcggttggacatgggggcggagtctctcatgaggcactcatcccaccgcccg
caacttcctctgggaggggcagaagacatgttaaaggaccggggcagctccatggggaag
ctggagcccatctcccccgtcagcccggcccagatggacccggacctggacctggtgcca
gcccgcttctccaaggaggagctcatccagaacatggaccgtgtggaccgggaaatcacc
atggtggagcagcagatctgcaagctacgcaagaaacaggtacagcaacagctggaggag
gaggcagcaaagccccaggagccggagcggtccatgatctctcccccgcccagcgaggcc
aagcaccgtagcctggtgcagataatctacgatgaaaacaggaaaaaggcagaggaagct
cacaggattctggaaggactgggaccacgagttgaactgcctctgtacaaccagccctca
gacaccaagcagtaccatgagaacatcaaaataaaccaggcgatgaggaagaagctaatt
ctttacttcaagaggagaaatcatgctcgtaagcagtgggaacagaagttctgccagcgc
tatgaccagctgatggaggcctgggagaagaaggtggagcgtattgagaacaacccccgg
cgccgggccaaggagaacaaggtgcgcgagtactacgagaaacagttccctgagatccgc
aagcagagagagctgcaggagcgcatgcagagcagccgggtggggcaacgtggaggagga
ctggcctcgtctgcagcccgcagtgaacacgaggtctctgagatcatcgacggcatatca
gagcaagagaacaccgagaagcaaatgcgtcagctggcggtcatccctcccatgctattt
gacgcggagcagcagcgtatcaagttcatcaacatgaacggcctgatggatgaccccatg
aaggtgtacaaggaccggcagttgatgaacatgtggagcgagcaggagaaggacaccttc
cgtgagaagttcatccagcacccaaagaactttggcctgattgcttctttcctggagaga
aagacggtggcagagagtgtcctcttctactacctgactaaaaagaacgagaactacaag
aacattgtgcgcaggaactatcggcgccgtggcaggagccagcatggccagcagcagcag
cagcagcaacaaccacaggtgaaccgcagcagccaggaggagaaggagaaggagaaggag
gagaaggagaaggagaaggagaaggagaaagagaaggagaaggacggagagagggatgag
gagaagactgaaggggaagacaaggaggatgtaatgaaggacgacacctctggcgaggac
ggggaggacaaagagcccacggtggctttcaagggtcgacgcacggccaacagccagggc
cgccgcaagggccgcatcacccgctccatgaccagcgaggtggaggagaccgccacaccg
ccactcagcagcgaactcgccaatctggagatgaatgagagctctcgctggactgaagag
gagatggaaaccgccaaaaaaggtcttctccagtatggtaggaattggtcggccatcgcc
aagatggtgggctccaaaactgtgtcacagtgcaagaacttctacttcaactacaagaaa
aggcagaaactggatgagattctgcagcagcataaaatgaaatcggagagagagcgtaag
gcgcggcgtaaaggcaaagccctacaaagtgaagaggccagcgccccgtctgctgccgag
gaagaggagatggagggctccggggccagtggcaacgaggaggaggcccccgaggatgga
gaaggtggtgctaataacagctcggacacagagagcctgccctctccgcgctctgaggac
agcaaggctaaagaggagggtggcggtagggccaaggctggctccaaccctgaggacaag
gaggcctcaggctcccacatggtccagggaggagatgaaaagcccccgggagatggggac
aaagccatcaagcaggaggtgaagactgaggcaggggagggtagcaaggagctgcccagt
gaatccacagaccgagaccggaagccccccactgcagaggcagaggagggcaagagctct
tccaagagctccaagagggaccacgagcccaagacgggctcccacgcagacagtgactct
agcgccacctgcagcgctgacgaggtggaggagtcagagaacaccgagaagaacagattg
acgtccccaagccgtcccagcctgctaaactatgctcatgatggggtcatctcctccccc
ctgcagaagcccatggacctgaaacagctcaaacagagggctgcagccatcccccctatt
atgccccagatgccggagggtggtccacggggtgggggtggtaaggccgtgctgcccccc
catgccctggctctctaccagcagcagatcaccatggcccacggagagtcctcccaggag
gccaagcagcagcagcatgcaggtcagcccagcaaacagcacccctacccagcacaggga
gacagagacccccacaacatcagcagcccccgcatccgcccacgcagcccctccaccagc
gacaaggacgagctggaaggcaacgagaggtggctgcagactctacttcacggattacat
aaatcccgggccttctctcctcacggggaccccaagaagcaggcggtggggccagaggac
ctgagggccactaccctgggccggcctgtcatgtccccctacccaatgtcccctcgagac
atggccaagctcagccacgaccagcacctgcttcactataactcctctttccagcaggtt
ggccactctgggccccctggtctgcagcaggatggcgccaggttggcagcagtgcgcccc
ctccacatgccagagccaccccctctcatctcctccaacaagccaggggggtctatcaca
cagggcaccccagtgcagctgcatagcccggctcatgggatggaccacgggaagatgccc
cctgcacagatgggtttgtcctggatggatcagaggaaagtgggtgagtccaagtgtctg
gagtgggtgcagcattcccagccttggtttgctggtccctaccctgtggtgaagcaggag
cagctgtccccgcggtgctcgtcctcccaggcagagaacctgtccacgcagggggcgccc
cacgacaccaacgctggacgtgggtccatgccagcggtgcaggggggcagcatcaccaag
ggcatcccagggaccagagtgcaccaggactcccccatctcctaccgaggaggctccatc
acccagggcaccccggcagacgtgctgtacaaggggaccataacccgtctgatcacggag
gacagccccagcagggcagagagggagcgggacgaggccctgtccaaaggacatgtggtc
tatgagggcatcagcggacacatcctcacctatgaccgcctaccctctcagaaccctaaa
gaggacggccggggccagcctggggagatcttggggttgaagcgcccctatgatgtcatg
gagggagggatctccagagggctgcccacaagggactctctgtctgcagccaactgtgag
ggtctgataggtagagccatgccccatgagagagacagcccacacccgacccaccacatc
cgtggttccatttcacagggtatcccccgtcacctggacccccaggatggctacatgagg
cgggaggccaagcagatgaagagagagggctccccgccccgagggcctggcctgatggct
gaccccatgaagggccgagaggtgcccaccgtgaaggaggggggccgatccatccacctc
atccccagagaggagctccgacagatgcccgaaggcatgatgatggccaaggctggcaaa
gagggcatcatagcacagggcactcctatgaagcaggagcagggtggctcaaggaagggg
catgacgttcgctccatcatcgccagctccccgcgctcccactatggcatgccccctcac
ctggagatgcgggggcctgagcagcgggtccgctacgacgaaggtccaaagggccgtccc
agcgctgtggtcagcacggccagctccatggcccgctcctcgcccctggccatggggggt
gaacagggtggcaaggcccaccacagccctgtgggctacgaggaacacaagggcggcatg
agggctccctaccctgggccttctcacagaggatccccactgtccagagagtcaggccag
cggcagcatgaaggctccaataagaaccagcctcaggagcggaagtccacacccacccct
agggagatgagctccggcaagtcacccctgccgtgtgttgccgagcagcaggcccaacaa
caggcccaacaacaagcgtccctggcgtcgtacgagcgtctgctgcagggtctaggggcc
gacgtgtaccgaggtcagatccccctggcctttgaccctgctgccctgcgtcaggggatc
cccatcgacccagcggcctactacctgcctcgccacctggcccctaaccctggctacccc
cacccctacccctacctgatccggggcttccccgacacggcggccctggagaaccgccag
acgctgctcaacgactacatcacctcccagcagatgcaccagtggcctgcagccgccgcc
atggctgcccagcgctcagacctgctgagggggctctcgccacgggaccagcccctccaa
ctgccctactctgctgccccacgtgggatcatcgatctgtctcaggtgccacacttacct
gtcctggtccctccctctgcagggtcttccggctccccaatggaccgcatcacctacatc
cctgggggccaaggagccttcaccagccagccctacaccacctctcccatctcaccagtt
gggccccaacacatgagcaagcagcacggcacgctgtcgtctgctgaccgcgagcgagaa
agagaccgggagagagaccgcgagagggacagggaacaggagagagagagggatcgcgag
agacagcgggatagagagagagagcgggagagagagcgggacagggacagagagaagggt
atctctcacggcaacgtggaacatgcccccatctggagaccaggcacagagcacagctca
ggcggtagtgtccggccctcctcccactccggctatggccaccagcactccccggtgtcc
cctcgcacccaggacagtgtccagcagaggcccagcgtcctgcacaacactgggggcaag
agtctgcctgtcagcgaccacaacaacccctctgtgctaaggtccatgccaggctcaaat
cgctacccaggctacggccacctccagaggaccggggtgccacctgagggctacccacca
agcatggactccaaggaaatgtgccgggatgggggcaagagtaggggaggccttcccaaa
cacacccaagaccaacatgggccgtctatatcctccagcaaatctgaccccaagctggcc
agccctaaccaagggggttaccccggcccctacccccagggctctgcagcctctcaccac
tcagggcgaccccctcacctgctgcccccccagtcagataaccctgctggccgcggagaa
agtggcacgcctagtagggaaaagactcaaaacaaaccgatgtccgttcaggaacaagag
ctccgagcactcggtaagaccaccatgactgcggccaacttcataaacgcgattatcatg
cgtcaaatttcttgtgaaacgggaatgccagagacgggctcgctcgtggccaacagcgcc
tgtgatgttcaacagaagatgatgcccatggagcagcacgttctgtaccggcctccctct
gaggagaggctgtccccgggccagcagccccagtcccccctggtcaaaggcagccagagg
gtggtcaccctggcccagcacatcagtgaggtgatcaccaaggactacacccggcagagc
cagcaggcccagcagcaggtccctatgcagcagtcctaccacaacaactctgtcctggac
ctgacccggccccccagcgccccccaggccccacctgcctcccaggagcccagccagggg
cctcgctacactccagagggagccggaggggatcgtccccgagacaggtcccctcctcag
cccaaggtgtcacctgtcaatatgtctacagacggcattgagcctgtgtcccctgcagga
gccatgtctgaaccagagacacaaggggcctcctaccccaacgagcagggcatgggctct
cgctcccctcccagcacctcccagcccccagccttcttcagcaagctcactgagagcacc
tcggccatcgtcaagtccaagaaacaggagatgatcaagaagatgaccgtggtcggcagt
gacgccgacttcaatcctggtcagccaggaacagagattttcaacatgcctgcctctacc
actgcaggacctgtgagtatacgcagccacccggctcctgaggtgtccggtaacaccata
ggcctggaggccattatcagaaaggccctgatgggcaagtatgatgaccaggccgaggag
cgccctccctcctccaatgctattaaccccatggttgccagtgtgcctgccgctatgctc
cccgctgatggacggacggaggactcttactcactgcaaggtggggggaagccaaagggc
agcgggcgttctaacgggcgcaaggccaaatcccccgggccgggcctgtcagtgggggag
aggccctcctctgtgtcatctgtccactctgagggggataccaaccgccgcacgcccgtc
accaaccgtgtctgggaggaccagccctcctccacaggccccacaaccttcccgtgtaac
cccctgaccatgcgtttccccagtggcatgccggtgtcgaactcctcccccaccccctca
ggccagttaggggctcaggggcagggacggtcctgggaggaggagcctaagcccctgctg
tgttctcagtatgagaccctgtctgacagtgagtga
DBGET
integrated database retrieval system
