KEGG   Coregonus clupeaformis (lake whitefish): 121550328
Entry
121550328         CDS       T08357                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    121550328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121550328
   03041 Spliceosome [BR:cclu03041]
    121550328
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     121550328
Spliceosome [BR:cclu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121550328
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_EML WDR55 ANAPC4_WD40 EIF3I NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WDR54 Beta-prop_NOL10_N Beta-prop_EIPR1 Beta-prop_IP5PC_F WD40_like Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 121550328
NCBI-ProteinID: XP_041718488
LinkDB
Position
10:63496088..63502019
AA seq 323 aa
MGPVEHLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSSALSPDATDLSQKPILTFTAHE
GPVFSLFSMDSHLLSAGNGEISAWSWAELIKRNTKAAWTRRPNYKSSLEIPEINAMTVNP
TENSLVIGGGDNNIHIMDLESGVFKSVLQGHTDYIHCLSVREREGEILSGGEDGAVRIWD
CRTGQSVHCIEVYKYEDCARPQYGKWISCLTTDSDWMLCGGGPSLSLWHLRSMSPTSIFP
LSGCQRQANFYQDMILSVGEGQCVSHCLLGGEVKAQIPCTPHSLNTLALNLNSTEHRVLT
VGGSSHQIDVFTNLSYRTFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggtcctgtcgagcacctccacatgtccgtgttctcccagagtttctctccctgtggt
cgcttcctagccgccggcaacaactacggcgaaatagctgtattcagtctctcctcagca
cttagcccagatgctacagatctgagccagaaacccatcctcacatttactgctcacgag
gggcccgtcttctctctcttctccatggactctcacctcctgagtgccggcaatggtgag
atcagcgcctggagctgggcggagcttatcaagcggaataccaaggctgcttggacaagg
aggccaaattacaagtccagcctggagatcccagagatcaatgctatgaccgtcaatccc
acagagaacagtctagtgattggaggaggggacaataacatccacataatggatctggaa
agtggcgtctttaagtcagttctgcagggtcatacagactacatccactgtctgagtgtg
agagagagggagggggagatcctctctgggggtgaggacggcgctgtcaggatatgggac
tgcaggaccggccaatccgtgcactgcattgaggtctacaaatatgaggactgcgcacgc
ccccaatatggcaagtggatcagctgcctgacgaccgactctgattggatgctctgtgga
ggaggcccatccctctctctatggcacctccgctccatgtcacccacctccatcttccct
ctctctggatgccagcgacaagccaacttttaccaggacatgatcttgtcggtgggtgag
ggccagtgtgtgtcccactgtctcctggggggagaggtaaaggctcagatcccctgcacc
ccccactccctcaacacgctggcacttaacctcaacagcactgaacacagggtgctgaca
gtaggtggaagcagtcaccagatagacgtattcaccaacctgtcctacagaaccttctcg
ctgtctttctga

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