Coregonus clupeaformis (lake whitefish): 121550388
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Entry
121550388 CDS
T08357
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121550388
04121 Ubiquitin system [BR:
cclu04121
]
121550388
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121550388
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121550388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
Gly_radical
DBD_Tnp_Hermes
DUF5371
Motif
Other DBs
NCBI-GeneID:
121550388
NCBI-ProteinID:
XP_041718551
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MTEFKRAFSLVWDHFTLVTPNKVQCSLCSQRLSFNKNTSAMLRHLRSRHPSEAWYSNSTS
GAHSSTSNSTSGVHSTFSNSIISSAGVHSSFSGTAGLNSIFTNSAAAGHHIQVRTTRQED
LDDALVNMLVKDTQPFSVVEEEGFAAFVQKLDPSYKLPNKQALKKMVGSRCEFINDNVVS
QMVISDFVSLTSDMWTSIDKHSYISVTGHLVAENAQLSTFLLGISKLPENHKVIHIEEAK
NQLVASWGLHSRVAAFVTETSDNMVATVQKLGILQLPSFAHVLNLVIKRSMEATLELQDI
RSQARAIVAFFKSNQNAEMRLAEVQGQLGRPEQKLIQEVDSRWNSSFSMLERVFDQRESV
AAALSTLDTDIIPLGSADYEVIHQCLGVLGSFNQATAELASEKRVSASKVIPLVRMLKIT
LEKKHGAIIHPTATQLVSNLQRELQTSCSMVETEPILALSALLDPRFKMLAFGNQGYAQE
AVKLLTSECASLIRINPDKDDTLPPSTTGSTTPSPTSPHTTSWAMETASISMATSLSKSH
NGGLWEMFDSKVGETQSVQSSTADAAVEVQHYLSDPYLNRVENPMHYWEKHSKVYPHLFQ
LARKYLSVPASSVPCERIFTKAGDVFNKKRSCLSMKAVEQIMLLNKGLV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgactgagttcaagagagccttctcactggtgtgggaccattttactctagtgacaccc
aataaggtccagtgctccctctgttcacaacggctgagcttcaacaaaaacacctcagcc
atgttaaggcacctacgatcaaggcacccaagcgaggcttggtacagcaactcaacatct
ggagcccactcaagcacaagcaactcaacatctggagtccactcaacattctctaactca
ataattagtagtgctggagtccactcatcgttctctggtactgcaggactaaactcaata
tttacaaacagtgctgctgctggacaccacatccaagtcaggaccaccagacaagaggac
ctggatgatgcccttgtcaacatgttggttaaagacactcagccattttcagtagtcgag
gaagagggattcgcagcttttgtccaaaagcttgacccaagctacaaacttccaaacaag
caagcactgaagaaaatggtggggtctcggtgtgaattcatcaatgataatgttgtgtct
cagatggtaatttctgactttgtcagcctgacttcggacatgtggacatctatagacaag
cacagttacatttcagtgacagggcatttggtagcagaaaatgcccagttatccactttc
ctccttgggatttctaagctgcctgaaaaccacaaagtgatccacattgaggaggccaaa
aaccaactggtggcgagctggggcctccacagcagggtcgctgcatttgtcacagagacc
agtgacaacatggtagccacggttcagaaactaggaatcctccagttaccctcttttgca
catgtcctgaaccttgtgattaagaggtccatggaggctactttggagctgcaggacatc
cgctcccaagcgcgggctattgtggctttcttcaagtccaatcagaacgcagagatgagg
ttagccgaggtgcagggccagctaggcaggccggagcagaagctgatccaggaggtggac
tcgaggtggaacagtagcttttctatgctggaacgtgtctttgaccagagggagtctgtg
gcggctgctctcagcaccctggacacggacatcatccctctgggatctgctgattacgag
gtcatccatcagtgtctcggagtgctgggttccttcaaccaggccacagccgagctcgcc
tcagagaaacgtgtctcggcctccaaggtcattcctcttgtccggatgctaaagataacc
cttgagaagaagcacggtgccatcatacaccctacggctacacagctggtgtctaaccta
cagagggagcttcagacgagctgcagcatggtggagaccgagccaatcttagctctctct
gctctcctagacccgcgcttcaaaatgttggccttcgggaaccaaggctacgctcaggag
gcggtgaagctcctcacctccgagtgcgcctcattaatccggataaatccggacaaggat
gacactctgccgccgtccaccaccgggtcgacaacgccctccccgacatcaccccacacc
acctcctgggcaatggaaaccgcttccatctccatggcaacatctctgtctaagtcccac
aatgggggtctgtgggaaatgtttgacagtaaagtgggcgagacacagagcgttcagagc
agcacggcggacgcagcggtggaggtacaacactacctcagtgacccgtacctgaaccga
gtggagaatcccatgcactactgggagaagcactccaaggtgtacccgcacctgttccag
ctggctcggaaatacctcagcgttcccgcctcatctgtgccatgcgagcgcatattcacc
aaagctggagatgtgttcaataaaaaaaggagttgcctcagtatgaaggctgtagagcag
ataatgctgttgaataaaggtctagtatag
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