Coregonus clupeaformis (lake whitefish): 121550390
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Entry
121550390 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121550390
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121550390
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121550390
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121550390
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Pentapeptide_4
DUF2716
Motif
Other DBs
NCBI-GeneID:
121550390
NCBI-ProteinID:
XP_041718555
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Position
18:20809316..20845718
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AA seq
471 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRILNERQQQTGEAEALAR
VYSSSLTNGLSTLNHEIGGTYANGHVIELPKGQVNGGAPGGYYHGMDSTQPSPDQSGLDM
AGIKHIKQEPVYDLTPVTNLFNYSAYQDSQLAPSNVSMGELDRIAQNIIKSHLETCQYTA
DELQQLAWQTHSYNDIKMYQSKTRDMLWQQCAIQITHAIQYVVEFAKRISGFMELCQNDQ
ILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGCDDLVSAVFDFAKSLCS
LQLTEEEIALFSAAVLISTDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDTLAKLIG
RIPTLSALCTLHTEELQAFQQLHPETVNVLFPPLYKELFNPDPNAAISIPK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcccaaatcgaagttataccatgcaaaatttgtggagacaagtcatcaggaatc
cactatggggtcatcacgtgtgagggctgcaaagggttcttcagacgtagtcagcagaac
aacgctgcatactcctgccctcgccagaggaactgcctgatcgacaggaccaaccgaaac
cgctgccaacactgtcgtttacagaagtgtctcgcactcggaatgtccagagatgcggtg
aagtttggccgcatgtcaaagaagcagcgagacagcctgtacgccgaggtgcagaagcac
cagcagcggatcctgaatgagcggcagcagcagactggtgaggccgaggccctggcgcgc
gtctactcctccagcctcaccaacggcctcagcaccctcaaccacgagatcggaggcacc
tacgccaacggccacgtcatcgagcttcccaagggtcaggtgaatggtggtgccccgggc
ggctactaccacggaatggactccacccagccctccccggatcagtcaggcctggacatg
gcgggcataaagcacatcaagcaggagcctgtgtacgacctgacccctgtcaccaacctg
ttcaactacagcgcctaccaggacagtcagctggcgccaagcaacgtcagcatgggagag
ctagatcgtattgcccagaacattataaagtctcacctggagacctgtcaatacacagca
gatgagctccagcagctggcctggcaaacacactcctacaatgacatcaagatgtaccag
agcaaaacgcgagacatgctgtggcagcagtgtgccatccagatcacccatgccatccag
tatgtggtggagtttgccaagcgcatctcaggcttcatggagctgtgccagaacgaccag
atccttctgctaaagtcaggttgtctggaggtggtcctggttagaatgtgtcgggcgttt
aacccgctcaacaacacagtgctgtttgaggggaagtacgggggcatgcaaatgttcaaa
gccctaggctgtgacgacttggtcagcgcagtgtttgactttgccaagagtctgtgctct
ctgcagctcactgaggaggagatcgctctgttctccgcagcagtgctcatctccacagac
cggccgtggctgatggagcccaggaaggtgcagaagctccaggagaagatctactttgcg
ctgcagcacatcatgcagaagaaccacatggatgaggacacgctggctaagctgattggt
cggatccccacactgtcggccctgtgtactctccacaccgaggagctacaggccttccag
cagcttcatcccgagacggtcaatgtgctcttccccccgctctacaaggagctgttcaat
cccgaccccaatgcagccatcagcatacccaagtga
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