Coregonus clupeaformis (lake whitefish): 121550404
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Entry
121550404 CDS
T08357
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00310
Lysine degradation
cclu00514
Other types of O-glycan biosynthesis
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121550404
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
121550404
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cclu01003
]
121550404
Enzymes [BR:
cclu01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
121550404
Glycosyltransferases [BR:
cclu01003
]
O-Glycan biosynthesis
O-linked Gal type
121550404
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
DUF6492
Motif
Other DBs
NCBI-GeneID:
121550404
NCBI-ProteinID:
XP_041718586
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Position
35:1769996..1795831
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AA seq
609 aa
AA seq
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MHRYIFLLSTALTLLFSVPAQGYFPEERWSPESPFLAPRVLIALVCRNSEHSLPYFLGTI
ERLNYPKDRVAIWVATDHNVDNTTAILRDWLVKVQKLYHYVEWRPQEEPTEYQDADSPKQ
WTNLRYAHVMKLRQAALDSAREMWADYFMVVDCDNLLTNPNVLWKLIKENKTIVAPMLES
RAAYSNFWCGMTSQGYYKRTPAYIPMRKQVRKGCFAVPMVHSTFLIDLRKESSRQLAFHP
PHPDYSWAFDDIIVFAFSARMADVQMFLCNKETYGYFPVPLRAHNSLTDEADSFLHSLLE
VNVRNPHVLPSEYIPAPRKIQDKLGFDEVFMINLKKRTDRRDRMLRTLYEQEIACKVIQA
VDGKAMNISEINALGIHMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIAERGLKSSLVI
EDDLRFEVFFKRRLMNLMTEVESQGLDWDLIYIGRKRMQVDRPEKSVPNIHNLVEADYSY
WTLGYMMSLQGAQKLLRAEPLKRILPVDEFLPVMFNKHPVTDYMEQFEERDLKAFSAEPL
LVFPTHYTGDAGYISDTETSVVWDNEKVRTDWDRARSGKTQEQAEISTEAQNSDVLQSPL
DSTATRDEL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcaccggtacatctttcttctgtccaccgccctgacgttactgttctccgtaccagct
caaggatacttccccgaagagcgctggagccccgaatctccatttcttgccccgcgggtc
ctcattgccctcgtctgccgcaactctgaacattctctgccttatttccttggaactatc
gaacgtctgaattatcccaaggaccgcgtggcaatttgggtagcgacggaccacaatgtg
gacaacactacagccatcctgcgtgactggctcgtcaaggtccaaaagctctaccactat
gtggagtggaggccgcaggaggagcccacagagtaccaggatgcagacagcccgaagcag
tggaccaacctccgctacgcacacgtgatgaagctgcggcaggcagcactggactccgcg
agagagatgtgggcagactacttcatggtggtggactgtgataacctattgaccaatcct
aatgtgctgtggaagctcatcaaggagaacaagaccattgtagctcccatgttagagtcc
cgtgcagcctactccaacttctggtgtggcatgacctcccagggttactataagcgcacc
ccggcttacatccctatgagaaagcaggtgcgtaagggatgcttcgcggttcccatggtg
cactccaccttcctgattgacctgaggaaggagtcgtcacgccagctggccttccacccc
cctcacccagactacagctgggccttcgatgacatcattgtcttcgccttctccgctcgc
atggcagatgtgcagatgttcctatgtaacaaagagacgtatgggtatttccctgtgcca
ctgcgagcccacaactccctgacagacgaagcagacagtttcctgcattccttgttggag
gtcaatgtgcggaaccctcatgtgctgccctcggagtacatcccggcccctagaaagata
caagacaaactgggctttgatgaggtgttcatgatcaacctaaagaaacggaccgaccgg
cgggatcgcatgctgaggactctgtatgagcaagagattgcctgcaaggtcattcaagcg
gtagacggcaaagcaatgaacatcagtgagatcaatgccctggggatccacatgctacca
ggctacagtgatccataccatggcaggcccctcaccaagggagagctgggctgcttcctc
tcacactacaacatctggaaagagatcgcagagcggggtctgaagagttccttggtgatc
gaggacgatctgcgtttcgaggtcttcttcaagcgacgcctgatgaacctgatgactgaa
gtggagagccaggggctagactgggacctgatttatatcggcaggaagaggatgcaggtg
gaccgccctgagaagtccgtgcccaatatacacaacctggtggaggccgactactcctat
tggacgctgggctatatgatgtcattacaaggagcccagaagctgctgagggcagagccg
ttgaagaggatattacccgtagatgagttcctccctgtcatgttcaataaacaccctgtc
acggactacatggagcagtttgaggagcgggacctgaaggccttctcggccgagcctctg
ctagtgttccccactcactatacaggagacgcgggctacattagcgacacggagacctcc
gtggtgtgggacaacgagaaggtgcgtacggactgggaccgggcccgctcggggaagacc
caggagcaggcggagatcagcaccgaggcccagaattctgacgtactccagtcacctctg
gacagcacagccacacgggatgaactatga
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